RnoEX0079977 @ rn6
Exon Skipping
Gene
ENSRNOG00000027098 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:RGD Symbol;Acc:1565281]
Coordinates
chr1:198383201-198386111:+
Coord C1 exon
chr1:198383201-198384175
Coord A exon
chr1:198385101-198385232
Coord C2 exon
chr1:198385812-198386111
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACAGGACTTCACCTCCTAGGTT
3' ss Score
5.26
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GTGATAAGCCCCGGTTGAACCCTATAAGGACCCTCTGGATCTTCAAGTCCACCCTGGACCCCCGGAAGCTGCCTTTTCCCTCCCACTTCCCCTGGCTAGCTAGCTATCATCCCGATGGGCCCAAGCGCCCGAACAAGGGGATAACCTTCGGCCCTCTCGGCCCCACCCCCCGCAGCGGGAGCCGCGCCCCCCTTTGCCATAGATCGCAGAGCAAAGGATAAAGATTAAGCAAAAGGGGGCGGACTCCAAGCAACCCCTAGGCCAATTCTGCTCCTCCATCCCAAAGGAAGAAATATTGTCTTCCTTTGCTGACCCTTAGCAGGAAAGCAAAATTAAAGGAAAAGATAAAAGGACGCGAAGGGAAAGTGACAGCTAGATTATTCAGAAGAGCCACGGAGGAGAGAAATTAGGGTGAGTCGCCATGGGGACTCCCAAGGCCCAGCACCCGCCGCCTTCCCAGCTGTTGTTCCTAATTCTGCTGAGCTGTGCCTGGATTGAGG
Seq A exon
GTTTGCCCCTGAAGGAGGATGAGATGATGCCAGAGCCTGGAAGTGAGACTCCCACAGTGGCCTCTGAGGACCTGGCTGAGCTGCTCCATGGGGCTTTGCTGCGGAAGGGCCCAGAGATCGGCTTCTTGCCGG
Seq C2 exon
GATCTGACCCAGACCCCACACTAGCCACCCCTCCAGCCGGCCAGACTCTTGCAGCACCCTCCCTGCCACGTGCCACTGAGCCGGGGACAGGGCCTCTGACGACAGCTGTCACCCCTAAAGGGGTCAGAGGGTCAGGCCCCACCGCACCAGAGCTGCTGACCCCACCCCCTGGAACTACAGCCCCGCCCCCACCTGGCCCCGCCTCCCCGGTCCCACCCCTCAGGCCCGAGGGAGGAGAGGAAGAAACCACCACCACCATCATCACCACAACAACTGTTACCACTACTGTCACCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027098_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.956 C2=0.990
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAGAAGAGCCACGGAGGA
R:
TGACCCTCTGACCCCTTTAGG
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]