MmuEX0041894 @ mm10
Exon Skipping
Gene
ENSMUSG00000030683 | Sez6l2
Description
seizure related 6 homolog like 2 [Source:MGI Symbol;Acc:MGI:2385295]
Coordinates
chr7:126950563-126953073:+
Coord C1 exon
chr7:126950563-126951116
Coord A exon
chr7:126952000-126952131
Coord C2 exon
chr7:126952774-126953073
Length
132 bp
Sequences
Splice sites
3' ss Seq
CACAGGACTTCACCTCCTAGGTC
3' ss Score
5.69
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
AGATAAGCCCCGGTTGAACCTCATAAGGGCCCTCTGGATCCTCAAGCCCACCCTGGACCCTCGGAAGCTGCCTTTCCCCTCCCACTTTCCCCGGCTATCTATCTATCCATCCCGATGGGCCCAAGCTCCCGAACAAGGGGATAACCTTCGGCCCTCTCGGCCCCACCCCCCGCAGCGGGAGCCGCGCCCCCCTTTGCCATAGATCGCAGAGCAAAGGATAAAGATTGAGCAAAAGGGGGCGGACTCCAAGCAACCTCTAGGCCAATTCTGCTTCTCCATCCCAAAGGAAGAAAATTTGCCTTCCTTTGCCGACCCTTAGCAGGAAAGCAAAATTAAAGGAAAAGATAAAAGGACGCAGAGGGAAAGTGACAGCGAGATTATTCAGAAGAGCCACAGAGGAGAGAAATTAGTGTGAGTCGCCATGGGGACTCCCAAGGCCCAGCACCCGCCGCCTTCCCAGCTGCTGCTCCTAATTCTGCTGAGCTGTGCCTGGATTGAGG
Seq A exon
GTCTGCCCCTGAAGGAGGATGAGATGATGCCAGAGCCTGGAAGTGAGACTCCCACAGTGGCCTCTGAGGACCTGGCTGAGCTGCTCCATGGGGCTTTGCTGCGGAAGGGCCCAGAGATCGGCTTCTTGCCGG
Seq C2 exon
GATCTGACCCAGACCCCACACTAGCCACCCCTCCAGCCGGCCAGACTCTTGCAGCACCTTCCCTGCCACGTGCCACTGAGCCAGGGACAGGGCCTCTGACGACAGCTGTCACCCCCAAGGGAGTCAGGGGGGCAGGCCCCACCGCGCCAGAGCTGCTGACCCCACCCCCTGGAACTACAGCCCCGCCCCCGCCTGGCCCCGCCTCCCCAGTCCCACCCCTCAGGCCTGAGGGAGGAGAGGAGGAAACCACCACCACCATCATCACCACAACAACTGTCACCACCACTGTCACCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030683_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.822 C2=0.979
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCCTTAGCAGGAAAGCAA
R:
GAAGGTGCTGCAAGAGTCTGG
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types