BtaEX0032317 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6481649-6578841:+
Coord C1 exon
chr17:6481649-6481749
Coord A exon
chr17:6578577-6578658
Coord C2 exon
chr17:6578741-6578841
Length
82 bp
Sequences
Splice sites
3' ss Seq
TTTCATAACTCCTCTGTCAGACA
3' ss Score
4.48
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
CCGGCGGCGGGAGGACGAGGACGACGAGCTGCGCGAGCGCCGCGAGCTCGGGGGCCCGCGCCGCGCCCGGGGCCGCGTGCTCTCCGGCCACCCGGCCGCAG
Seq A exon
ACAAATCCTCTCAACTCTGAAGGAGAGCCTTATGTAGGGGAAGACACAGCAACCTTTGAACAGCCCTTTGTGAAATCTGATG
Seq C2 exon
ATCGAAACGAACGAAATAAACCAGAGCATCGTTCTTCAAGGTATGAATTTATAGTTATTTAATAACTCTGTATAAAGCTTCTCTTTTAGGAAATATTATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGACGAGGACGACG
R:
ACCTTGAAGAACGATGCTCTGG
Band lengths:
135-217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development