HsaEX0057983 @ hg19
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152147199-152247532:-
Coord C1 exon
chr4:152246393-152247532
Coord A exon
chr4:152147320-152147392
Coord C2 exon
chr4:152147199-152147238
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCTGCCTCTGTCAGGCG
3' ss Score
7.72
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
GGCCTTAGGGGCCGATAACCCCTCCCTGAGGAGGCGAGGCCAGCCCCGAACCCGCCCGATCCGCGGTGGAGCTCTACGGGGCGGGGAAGGCAAAGAGGAAGGGGGAAGAGAGCGGGAGTGGGAGTGGGAAAGGCCAGGGATTAAGAGGCCGCCGGGACGCCGCAAGGAGGCGGGGAATCGGCTCGGCCCGCGCCCTGCCGCTGCCCGGCCGGCTGCAGGTGGAGTTCGCGGAGGTGGCCATTTCCACAGCCGCCGCCGACGCCTCCTCTCCGGGAGCCGCCTTCCCCCCGGCCCGAGGGCGGTGGCGTGGGGCGCCGGGTGCAGGCGTTCTGGGGCGCCGGGGCCGCAGCTCGCTGGCCATCCCGCGGCTGCGCCCCGCGCCTCGCCCATGGCTGAGGGCCGGCGGCGGGAGGACGAGGAGGAAGAGCTACGCGAGCGCCGCGAACTTGGTGGCCAGCGCCGCGCCCGGGGCCGTGCGCTCTCGGGCCACTCGGCCGCAG
Seq A exon
GCGAACTGTGATGAAGAGCCTTATACTTAGGAAGACACAACTACCTTTGAACAGTCCTTTGTGAAATCTAATG
Seq C2 exon
ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGACGAGGAGGAAGAG
R:
GAACGATGTTCTGGTTTATTTCGT
Band lengths:
127-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)