HsaEX0057983 @ hg38
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151226047-151325632:-
Coord C1 exon
chr4:151325241-151325632
Coord A exon
chr4:151226168-151226240
Coord C2 exon
chr4:151226047-151226086
Length
73 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTCTGCCTCTGTCAGGCG
3' ss Score
7.72
5' ss Seq
ATGGTATGG
5' ss Score
6.63
Exon sequences
Seq C1 exon
AGAGCGGGAGTGGGAGTGGGAAAGGCCAGGGATTAAGAGGCCGCCGGGACGCCGCAAGGAGGCGGGGAATCGGCTCGGCCCGCGCCCTGCCGCTGCCCGGCCGGCTGCAGGTGGAGTTCGCGGAGGTGGCCATTTCCACAGCCGCCGCCGACGCCTCCTCTCCGGGAGCCGCCTTCCCCCCGGCCCGAGGGCGGTGGCGTGGGGCGCCGGGTGCAGGCGTTCTGGGGCGCCGGGGCCGCAGCTCGCTGGCCATCCCGCGGCTGCGCCCCGCGCCTCGCCCATGGCTGAGGGCCGGCGGCGGGAGGACGAGGAGGAAGAGCTACGCGAGCGCCGCGAACTTGGTGGCCAGCGCCGCGCCCGGGGCCGTGCGCTCTCGGGCCACTCGGCCGCAG
Seq A exon
GCGAACTGTGATGAAGAGCCTTATACTTAGGAAGACACAACTACCTTTGAACAGTCCTTTGTGAAATCTAATG
Seq C2 exon
ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX2-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGACGAGGAGGAAGAG
R:
GAACGATGTTCTGGTTTATTTCGT
Band lengths:
127-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development