HsaINT1028240 @ hg38
Intron Retention
Gene
ENSG00000189099 | PRSS48
Description
protease, serine 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr4:151282148-151283286:+
Coord C1 exon
chr4:151282148-151282413
Coord A exon
chr4:151282414-151283116
Coord C2 exon
chr4:151283117-151283286
Length
703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTCCTGTCTTCCTCCACAGATA
3' ss Score
12.77
Exon sequences
Seq C1 exon
GACCTGGACTACTTTTTCATATACTGTGTGGCTAGGATCGATTACAGTAGGTGACTCAAGGAAACGTGTGAAGTACTACGTGTCCAAAATCGTCATCCATCCCAAGTACCAAGATACAACGGCAGACGTCGCCTTGTTGAAACTGTCCTCTCAAGTCACCTTCACTTCTGCCATCCTGCCTATTTGCTTGCCCAGTGTCACAAAGCAGTTGGCAATTCCACCCTTTTGTTGGGTGACCGGATGGGGAAAAGTTAAGGAAAGTTCAG
Seq A exon
GTGAGAATGGGCAGAGAGAAGGGTTGTTTCATATGTCATCCTCTTGTACTCCAGAACATTCATATTCTAGGCATATCCTTACCATGGAAAATATTTTTCAACAAAACCAGATCAATCTAATGATATTATCTATAAGTTTTTAAATAAAATATCTTTTTTGACATTTATATTTTTATGTTATTTACTCTTGCATCTTGCAGAGTCTAGCTATAGCTGGAAGAGCAGATACTAACAATTTAAACACATAACTACCTCTCTCAAACAGAGGTTAATAAGACTGATTTAAAGTTTGGAGAGCGTCTAGTGTTTTTTAACTGTTTTTCAAGTTTTACGTCAACTCTTTCCCAGGTTGGAGTAGACACAAGACAAGAACTGATCTAGAAGCAAAAAACATGGGAAAGGAAGAAGTTTTAGAATCCTTTAGAATAGTCATACCTTTACTCAATCAGAATTTATCGGAAGTACTCATTATTTAGAACAATGGCTCAATTAAAAAAAAACCTCAAAGAAGCAGAAATAATTTAGAATTACTGAGTTTTAGATTTAAGTGTACCAAAAGATCCACCCATAAGCAAATATGATTGGAAAGGCATTGTAAGCTGCTTTTGGATTCCCATTCAGAGACTTCTGCACATCATGACTGAATGCTGCCCCTGCACTTTTCTAGGTTGCTTTAATCTTTTGTTCCTGTCTTCCTCCACAG
Seq C2 exon
ATAGAGATTACCATTCTGCCCTTCAGGAAGCAGAAGTACCCATTATTGACCGCCAGGCTTGTGAACAGCTCTACAATCCCATCGGTATCTTCTTGCCAGCACTGGAGCCAGTCATCAAGGAAGACAAGATTTGTGCTGGTGATACTCAAAACATGAAGGATAGTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189099:ENST00000455694:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(52.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACTCAAGGAAACGTGTG
R:
TCTTCCTTGATGACTGGCTCCA
Band lengths:
342-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains