MmuINT0127530 @ mm10
Intron Retention
Gene
ENSMUSG00000049013 | Prss48
Description
protease, serine 48 [Source:MGI Symbol;Acc:MGI:2685865]
Coordinates
chr3:85997212-85998313:-
Coord C1 exon
chr3:85998054-85998313
Coord A exon
chr3:85997379-85998053
Coord C2 exon
chr3:85997212-85997378
Length
675 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTCCCCGGCTTCCTGTGCAGGTC
3' ss Score
11.38
Exon sequences
Seq C1 exon
GACCTGGTACAGTTTTCTATACAGTGTGTGGCTTGGATCCATCGATAGAGAGTACTCAAGCACAGGCAAAGAATACTATGTGTCCAGAATCGCCATCCCCGACAAACACCGCCACACAGAAGCAGACATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCTCATCGGTCATTCTGCCCATCTGCTTGCCCAATATCTCAAAGCAGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGACAAAATCAGGAAG
Seq A exon
GTACAGGAGAGATGGGGAGAGACAGGGTCTTGTGTAGCTCAGGCTAGCCTTAAACTTACTCAGTGGCCAAAGCTGGCCTTGAACTCATGCCCCTCACATCTCACCTTCTGTCTACACTCGGCTCTAGCTAATATTATTCAACTGGATCAAATCAATCTACGAGTTTTCAGATGGAATATCTTTTGGCACTTACACGTTTATTGACTCCTGTGTCTTGCCTAGAGCCTGGTTATAACTGACAGAGCAAATGCTAACAATTTAAACACATAATTATCTCTCCTTCAGAGATTATTAAACATGACTTAATGTTTGGAGAGTCTAGCTTTGCTTGGTTTGGTGTGTATATGTTAATTTGTTGACAAAATGTATGTCAACACTTTTCCAGGTGAAGTAGAGATGGGACAGGAATTTATCTGAAAGCAGAAAATGAGGAGGAGCAATTTTAGAATAACTTAGATTATCTTCATTTTGACTTAATCAGAAGTTACCTGAATATTCTTTATTTAGAATACTGGCACAAGTAAAAACCCTCAAACACAAAGAATTCAAACTTATTATCATTTCTTTTAGATCTTTCCATAAGCAAGTCTGGCTGGAAGGTGGATGATTCTGACTGACTGTTGCCCTGGCCACTGGGCAGGCTGTTAAGCTCTTCCTCCCCGGCTTCCTGTGCAG
Seq C2 exon
GTCACTACCCCTCTACCCTCCAAGAACTTGAAGTGCCTGTCATTTCCAGTGAGGCGTGTGAACAACTCTACAACCCAATTGGTGTCTTCCTCCCGGATCTGGAGCGGGTCATCAAGGAAGACATGTTCTGTGCTGGTGAGAGGCAGTCGAGGAAGGATAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049013:ENSMUST00000061343:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCTTGGATCCATCGAT
R:
GTCTTCCTTGATGACCCGCTC
Band lengths:
357-1032
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types