BtaINT0118779 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004633 | PRSS48
Description
protease, serine, 48 [Source:HGNC Symbol;Acc:HGNC:24635]
Coordinates
chr17:6520209-6521420:-
Coord C1 exon
chr17:6521155-6521420
Coord A exon
chr17:6520379-6521154
Coord C2 exon
chr17:6520209-6520378
Length
776 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATTCCTATTTATCTCTACAGATG
3' ss Score
10.3
Exon sequences
Seq C1 exon
GACACGGATTCCTTTCTTGTACACTGTGCAGCTGGGGTCAGTTGAAAGGGACAACCTCGATGAAGGCGTGATACTTCGTGTGAGCCAAATTGTCATCCATCCCACATACAGTAATGTCAGTGGAGACATTGCCCTGTTGAGGCTGTTCTCTAGAGTCACCTACAGTTCTTCCATCCTGCCCATTTGCTTGTCCAATGTCAAAAAGAAGCGGTTGATAATTCCAGACTCTTGCTGGGTGACTGGATGGGGAAAACTGAAAGAAGAAG
Seq A exon
GTGAGAATGCACACAACAAGGGGGTGTTTTATACATCACCTTCTTGTACCCACTTCAGGGTATTCATATTCTGGGCATTTCAATACTGTAGCAAAGATTTTCTACAAAACCAGATCAACCGACACTCTCCAGAAGTTTTCAAATAAAATATCTGCCTATTTATATGACTACTGCTACTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCAGAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGGGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTAGCGACCCCATGGACTACAGCCCACCAGGCTCCTCTATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTAGTGCTTATTTAATCTGTTTTCAAAGTGTTGTGTCAACTCTTTGAATACTTTAGAATATTCACATTTTTACTTAATCAAAATATATCAGAATTTCTCTTTATCTAGAACATTAAGAATACCCCAGATGGGTGATCAAAAAATCACAAACAGAATTTTTAATTATCCATTGTTTTAGATTAACTATGCCACAAAACTGTTCCATTAGCCAACAGGATTAGAAAGTGACTGTATTCTGCTTTTGGATTACCATTCCGAGATGTCTGCATATCATGACTGAATGTTGTCCCTACTGTTCCAGGTTACTTTTCCTTTCATTCCTATTTATCTCTACAG
Seq C2 exon
ATGCTGATTACCCTACCATACTCCAGGAAGCAGAAGTACCCATCATTAAACGCCAGAAATGTGAAAACATCTATAACCCACTGGGCTCCTTCTTGCCACAAATACAGCCAGTCATCATGGAAACCATGATTTGTGCCGGTGATGTTAAGAAAGGGAAGGATACCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004633:ENSBTAT00000006095:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCGATGAAGGCGTGAT
R:
TCACCGGCACAAATCATGGTT
Band lengths:
357-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development