HsaINT0133015 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr4:152203300-152204438:+
Coord C1 exon
chr4:152203300-152203565
Coord A exon
chr4:152203566-152204268
Coord C2 exon
chr4:152204269-152204438
Length
703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTCCTGTCTTCCTCCACAGATA
3' ss Score
12.77
Exon sequences
Seq C1 exon
GACCTGGACTACTTTTTCATATACTGTGTGGCTAGGATCGATTACAGTAGGTGACTCAAGGAAACGTGTGAAGTACTACGTGTCCAAAATCGTCATCCATCCCAAGTACCAAGATACAACGGCAGACGTCGCCTTGTTGAAACTGTCCTCTCAAGTCACCTTCACTTCTGCCATCCTGCCTATTTGCTTGCCCAGTGTCACAAAGCAGTTGGCAATTCCACCCTTTTGTTGGGTGACCGGATGGGGAAAAGTTAAGGAAAGTTCAG
Seq A exon
GTGAGAATGGGCAGAGAGAAGGGTTGTTTCATATGTCATCCTCTTGTACTCCAGAACATTCATATTCTAGGCATATCCTTACCATGGAAAATATTTTTCAACAAAACCAGATCAATCTAATGATATTATCTATAAGTTTTTAAATAAAATATCTTTTTTGACATTTATATTTTTATGTTATTTACTCTTGCATCTTGCAGAGTCTAGCTATAGCTGGAAGAGCAGATACTAACAATTTAAACACATAACTACCTCTCTCAAACAGAGGTTAATAAGACTGATTTAAAGTTTGGAGAGCGTCTAGTGTTTTTTAACTGTTTTTCAAGTTTTACGTCAACTCTTTCCCAGGTTGGAGTAGACACAAGACAAGAACTGATCTAGAAGCAAAAAACATGGGAAAGGAAGAAGTTTTAGAATCCTTTAGAATAGTCATACCTTTACTCAATCAGAATTTATCGGAAGTACTCATTATTTAGAACAATGGCTCAATTAAAAAAAAACCTCAAAGAAGCAGAAATAATTTAGAATTACTGAGTTTTAGATTTAAGTGTACCAAAAGATCCACCCATAAGCAAATATGATTGGAAAGGCATTGTAAGCTGCTTTTGGATTCCCATTCAGAGACTTCTGCACATCATGACTGAATGCTGCCCCTGCACTTTTCTAGGTTGCTTTAATCTTTTGTTCCTGTCTTCCTCCACAG
Seq C2 exon
ATAGAGATTACCATTCTGCCCTTCAGGAAGCAGAAGTACCCATTATTGACCGCCAGGCTTGTGAACAGCTCTACAATCCCATCGGTATCTTCTTGCCAGCACTGGAGCCAGTCATCAAGGAAGACAAGATTTGTGCTGGTGATACTCAAAACATGAAGGATAGTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
-PRSS48:NM_183375:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACTCAAGGAAACGTGTG
R:
TCTTCCTTGATGACTGGCTCCA
Band lengths:
342-1045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)