RnoINT0118789 @ rn6
Intron Retention
Gene
ENSRNOG00000024208 | Prss48
Description
serine protease 48 [Source:RGD Symbol;Acc:11436036]
Coordinates
chr2:185298029-185299138:-
Coord C1 exon
chr2:185298879-185299138
Coord A exon
chr2:185298196-185298878
Coord C2 exon
chr2:185298029-185298195
Length
683 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
ATTCCTGTCCTCCTCTGCAGGTC
3' ss Score
12.56
Exon sequences
Seq C1 exon
GACCTGGTTCAGCTTTCTTTACAGTGTGTGGCTTGGATCCATCGATAGAGATTACTCAAGCACAGGCGAGGAATATTACGTGTCCAGAATCGTCATCCCTAGCAAACACCACAATACAGACGGAGATATCGCCCTGCTGAAGCTGTCTTCCCGGGTCACCTTCACGTCGCTCGTTCTGCCCATCTGTTTGCCCAATATCTCAAAGCCGCTGACAGTTCCAGCTTCTTGCTGGGTGACTGGATGGGGGCAAAATCAGGAAG
Seq A exon
GTACAGAAGAGATGGGGAGAGACAGGGTCTTGCGTAGCTCAGGCTAGCCTTAAACGTGCTCAGTGGTCAAAGCTGGGTTTCTACTCACACCCCTCGAATCTCACTTTCCTGGAACTGGAGGCGTCTACACCCGGCTCTCGCTAATATTATTCAACAAGATCAAATCAGTCCACAAGTTTTCAGATGAAATATCTTTTGACACTTACACGTTTGTTTACTCCTGTAGAACCGAGTTATCACTGACAGAGCAAATGCTAACAATTTAAACACATAATTAGCTCTCCTTCAGAGACTATTAAACATGACTTAATGTTTGGGGAGTCTAGCTTAGCTTGGTTTGGTGTATGTATGTTAATTTGTCGACAAAATGTATGTCAGCACTTTTCCAGGAGAAGTAGAGATGGGACAGGAATTTATCTGGAAGCAGAAAACTGAGGAAGAGCAACCTTAGAATAATCTAGATTACCTACATTTTGACTTGATCAGAAGTTATCTGAACATTCCTTGTTTAGAATACTGGCCCGAGTGGAAACCCTCAAACAGAAAGAACTCAAATTCATTATCATTTTTTTATTTGACCATTTGGGATCTTTCCATAAGCATGGTGGGAAGGTGGCCGACTGACTGTTGCCCTGACCACTGTGCAGGTTGTTAAAATCTTTCATTCCTGTCCTCCTCTGCAG
Seq C2 exon
GTCATTACCCCTCTACCCTCCAAGAACTTGAAGTGCCCATCATTACCGGTGAGGCATGTGAACAACTGTACAACCCAATTGGCTTCTTCCTCCCGGATCTGGAGCGGATCATCAAGGAAGACATGCTTTGTGCTGGTGAGATACAGCAGAGCAAAGATAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024208:ENSRNOT00000046286:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(37.5=100)
A:
NA
C2:
PF0008921=Trypsin=FE(23.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGTGGCTTGGATCCAT
R:
TCCTTGATGATCCGCTCCAGA
Band lengths:
357-1040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]