HsaINT1041460 @ hg38
Intron Retention
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151226047-151226598:-
Coord C1 exon
chr4:151226168-151226598
Coord A exon
chr4:151226087-151226167
Coord C2 exon
chr4:151226047-151226086
Length
81 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
ACCATCTTCTTTCTCTACAGATC
3' ss Score
12.92
Exon sequences
Seq C1 exon
GAAATCCAACTTCTGAAATGTTCTGGGTGGTAGATAGTTAAGGGTGAAGCTGTATTGGTCTTAGTATTTGCAGATGTTGTAGCTGACTGCTCATTTTTCCCCCTCCCCATTCTGTTAGAAGCTTCTGCCAACCATGATTCATGGAATGATTTTTTTGAGCTGAGTAATCTGTGGCTTTGCAGTTTCCTTGCTTTCTTTCCTTAGCTAAATCTCTTCTAGTGTTAGCAAAGTATTTAGCACAGGAAAGATCTTATAAAATGAAATAATGCATGTAATGATGCATTTTCCAAGTAGATGATTTTAACAAACCGTAAGCTTTTATGCCTGTCCTTCATTGTGTCTTTTCTGCCTCTGTCAGGCGAACTGTGATGAAGAGCCTTATACTTAGGAAGACACAACTACCTTTGAACAGTCCTTTGTGAAATCTAATG
Seq A exon
GTATGGCAGCTGGTATTTAAAAACTTCTTTCCAGAGCTTTTAAAGAACCTTTTGACACGTAACCATCTTCTTTCTCTACAG
Seq C2 exon
ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686:ENST00000409598:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTAGATGATTTTAACAAACCGT
R:
TGGTTTATTTCGTTCGTTGCGA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains