BtaEX0033321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34792526-34919973:-
Coord C1 exon
chr2:34919873-34919973
Coord A exon
chr2:34826695-34826830
Coord C2 exon
chr2:34792526-34792607
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTGATGTTTTCTTCACTAGCCC
3' ss Score
6.85
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
AGACACTGAAGACACTGCAGAGAAAGGTGCTTATTCCAGAGGCGTTACAGAACATGGAGATTAAAGACCAGGGAGCTCAAATGGAGCCGCTGCTGCCTACG
Seq A exon
CCCTGAAGATGCTGAGACATAGAGGTGGCTGTGATTATCTTTTGTAAGACAGGAAATGCAATCTTTAGGGATCTCTGGAAATAGAAAGGTCATGCAGTCTGGAACCTGTGAGTCTTTTCAATCTCTAAGTCATCAG
Seq C2 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.714
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAGACACTGCAGAGA
R:
TCTAAATCTTCTTTCTCAAAGTGTGT
Band lengths:
179-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development