HsaEX1037583 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161620915-161771054:+
Coord C1 exon
chr2:161620915-161620978
Coord A exon
chr2:161624319-161624566
Coord C2 exon
chr2:161770973-161771054
Length
248 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCTTACCGGCCCAGGGA
3' ss Score
5.94
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
CCTATTCAAAGTGAAGATGATGAGGATGAGGACTTTATGATGATCCACTTTCACTTAACGAACA
Seq A exon
GGATCCAAGGCATTCAGTGCAAAACCTGGCCAGCAGCCCGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAATTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCGAGTGCCGGGCTGAGTGTAAGACACTGAAGACACTGCAGAGCAAGGTGCTTATTCCAGAGGCGTTACAAAACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG
Seq C2 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_MULTIEX2-3/6=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.729
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000375514fB26119
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAAGTGAAGATGATGAGGATGA
R:
TCTAAATCTTCTTTCTCAAAGTGTGT
Band lengths:
140-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains