HsaEX1037581 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161620915-161771054:+
Coord C1 exon
chr2:161620915-161620978
Coord A exon
chr2:161622192-161622371
Coord C2 exon
chr2:161770973-161771054
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTCATTGGATTTCTAAATAGGAG
3' ss Score
6.7
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
CCTATTCAAAGTGAAGATGATGAGGATGAGGACTTTATGATGATCCACTTTCACTTAACGAACA
Seq A exon
GAGCAGGCTAAACAGGAACCTATTTTTATAATCTCAGATCCAAGGAAACTTTACTGTAGTGGAAAGATCTCCAGACTGGCAGAAATATAAAATTTACCTGGGAGTATTTTTCAAAAAGTATATCCTCACCTACTTCTTCTCCTCACCCCCACCAAGGACATATCAGAATCTCCAAGGCAG
Seq C2 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_MULTIEX2-1/6=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.729
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000375514fB26119
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTGAAGATGATGAGGATGAGGA
R:
TCTAAATCTTCTTTCTCAAAGTGTGT
Band lengths:
138-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains