HsaEX0059787 @ hg38
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr2:161624338-161771054:+
Coord C1 exon
chr2:161624338-161624566
Coord A exon
chr2:161708694-161708829
Coord C2 exon
chr2:161770973-161771054
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTGATATTTTTTTCACTAGCCC
3' ss Score
6.24
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CAAAACCTGGCCAGCAGCCCGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAATTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCGAGTGCCGGGCTGAGTGTAAGACACTGAAGACACTGCAGAGCAAGGTGCTTATTCCAGAGGCGTTACAAAACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG
Seq A exon
CCCTGAAGATGCTGAGACATAGAGATGGCTGTGATTATCTTTTGTAAGACAGGAAATGCAGTCTTTAGGGGTTTCTGGAAATAGAAAGGTCATGCAGTCTGGAACCTGTGAGCCTTTTCAATCTCTAAGTCATCAG
Seq C2 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTTGAGAAAGAAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290_MULTIEX2-4/6=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.763 C2=0.729
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGAGTAGGAGCCATGT
R:
TCCACCTCTATCCACAACTGCT
Band lengths:
247-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development