HsaEX0059787 @ hg19
Exon Skipping
Gene
ENSG00000144290 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:13811]
Coordinates
chr2:162480845-162627545:+
Coord C1 exon
chr2:162480845-162481076
Coord A exon
chr2:162565204-162565339
Coord C2 exon
chr2:162627483-162627545
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTTGATATTTTTTTCACTAGCCC
3' ss Score
6.24
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGCAAAACCTGGCCAGCAGCCCGAGTGAGTAGGAGCCATGTGACTCTGGTGAGTTGGAGTGTGCAATTGCCTCCTGCTTCAGAGCTACCTGATCCGAATACTAAGCAGAGCGAGTGCCGGGCTGAGTGTAAGACACTGAAGACACTGCAGAGCAAGGTGCTTATTCCAGAGGCGTTACAAAACATGGAGATTAAAGACCAGGGAGCCCAAATGGAGCCGCTGCTGCCTACG
Seq A exon
CCCTGAAGATGCTGAGACATAGAGATGGCTGTGATTATCTTTTGTAAGACAGGAAATGCAGTCTTTAGGGGTTTCTGGAAATAGAAAGGTCATGCAGTCTGGAACCTGTGAGCCTTTTCAATCTCTAAGTCATCAG
Seq C2 exon
AGAAATGATGAAGAAGCAGTTGTGGATAGAGGTGGAACTCGTTCTATTCTCAAAACACACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144290-'3-13,'3-10,4-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=1.000 C2=0.738
Domain overlap (PFAM):
C1:
NO
A:
PF0001418=Kunitz_BPTI=PU(48.4=55.6)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGTGAGTAGGAGCCATGT
R:
TCCACCTCTATCCACAACTGCT
Band lengths:
247-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)