MmuEX1024054 @ mm10
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62133975-62158287:+
Coord C1 exon
chr2:62133975-62134075
Coord A exon
chr2:62147980-62148131
Coord C2 exon
chr2:62158206-62158287
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTGATCTTTTCTTCACTAGCCC
3' ss Score
7.33
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
Seq A exon
CCCTGTAGATGCCGAGAGACAGACATGGCTGAGCTTATTTATTTACTTATTTTTTTGTAAGACAGGAAGTGTGTGATCTTTTAGGGATTTCTGGAAATAGAAAGGTCATGCAGCCTGGATCCTGTGAGCATTTCCAATCTCTAAGTCAAGAG
Seq C2 exon
AGAAATGATGAAGAAGCCGTTGTGGATAGAGGTGGAACACGCTCTATTCTCAAAACACATTTTGAGAAAGAAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'3-6,'3-5,4-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000112480fB16966
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCCAGAACAGCCAGGG
R:
AATGTGTTTTGAGAATAGAGCGTGT
Band lengths:
162-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types