BtaEX0034603 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008676 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
Coordinates
chr17:58447959-58461199:-
Coord C1 exon
chr17:58461043-58461199
Coord A exon
chr17:58449093-58449108
Coord C2 exon
chr17:58447959-58448263
Length
16 bp
Sequences
Splice sites
3' ss Seq
ACCTTACCTACCTACTAAAGGAG
3' ss Score
3.3
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GCACCGTGGCCGGTCCCCCGAGGGAGGGCGGAAGTCCCGTCGAAGGCACTCTCGCCGCTGCTCCAAGACCCTCTGCAAGGCCAGCCCAGAGGCCCGGTCCAGCCCCCAACCCAGCCAGCCCCTCCAGATGCTCAGCTTCCTGTCAGCCAGGGGTGTA
Seq A exon
GAGGAGTTCTTGCTTG
Seq C2 exon
ATCACTGGGTCGGGGTCTGCTGCTGACCTCTTTACCAAAACAGCCAGCCCGCTCACCACCTCCCGAGGACGCTCCCAGGAGTATGACTCAGGCAATGACACCTCCTCGCCACCCTCCATGCAAATCAGCTCAACCAGGTCTCGGGGTCAAGAGAAGGGGAGCCCCAGTGGGGGCCTAAGCAAGAGCCGGGACCCCAACAGTGGAAACACCTCTGATTCAGGGAACTCTTTCACCACTTCCTCACCCCAGAACAAGGGGGCCACTTTGGAGAACCTCTCCCCCACCAGCAGGGGCAGAGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008676-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000011438fB6746
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCTCAGCTTCCTGTCAGC
R:
CATACTCCTGGGAGCGTCCTC
Band lengths:
116-132
Functional annotations
There are 1 annotated functions for this event
PMID: 27984743
Introduces a PTC. Increases with activity and contributes to downregulate nSR100
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development