BtaINT0141179 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008676 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
Coordinates
chr17:58447959-58461199:-
Coord C1 exon
chr17:58461043-58461199
Coord A exon
chr17:58448264-58461042
Coord C2 exon
chr17:58447959-58448263
Length
12779 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
ACGGGTGTTTTTGCTTTCAGATC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GCACCGTGGCCGGTCCCCCGAGGGAGGGCGGAAGTCCCGTCGAAGGCACTCTCGCCGCTGCTCCAAGACCCTCTGCAAGGCCAGCCCAGAGGCCCGGTCCAGCCCCCAACCCAGCCAGCCCCTCCAGATGCTCAGCTTCCTGTCAGCCAGGGGTGTA
Seq A exon
GTAAGTATTCCGCACAGCCTCCTCTGCCAGTCTTGGCCGGGACACTTGGGGGAGGTGGAGGCACAAGTTCAGGGCAGTGTATGACACATTTTAATTCAGTTTCGGGCAAATATCCCACTGGTTTCAGACCTCCTTCTTGATTTAACTGAATGGTCATTCACCAGCCTTTGGCAGCACCTGGCTTGGGGACTTGGCAAGTAGGGTTGTGTGTGGGGTGGGGGGAATGGGGAAAACCTGAAACACCCAGGCTCTTTATTAGGGGAATGGTGAAAATACATTTTGGTCTCCAGAGTGACATCTGCAGGAGGGCATGTGTGAGACACCATAGGAGGTTTCTTTGGGGAAGAAGGAGAAGAGGGGTCTTTGATCTAACAGAGGCACTGCAGCTTTGCAATGAGGTCTGCGTCTTTGACAGCTAGGCTGCAGCACTGATGAGCAGATGGGATTTGATGTCACCCGTATTAACTCGGCCTTGAATATATATGAGAATTTTCCTCCAAGGAGGTGATAGCACTTAACCTCTCATATTCACACAAGGTCTCAGGGAGTTGAGGACTCAGCTGTCTTCACTAGTTGCTTCCACAGGTGGGACCAAAAAGCCAAGGCTCAGAAAGATGAAGGTATGGAGTAAAGCCATAGGGCAAAGCAAGAGTGAATTCATTTGAGAAACTGGCCTTCAATGGGATCATGCCGCAGTCCCTTAGGTCAGCAAGGAGGGTCAGCTTCAGACAGTTTGATGCCAGGAAGTCTCCTCAGCAAAGCATTTGGAGTTGGGTCTGAACTCAGCTTCCTAGCTGTGTAGCTTGGAGAAAGTCATCCAACCTCTTTGAAACTCAGTTTTCTCATTGGCAAATTTGAAATAATACCACGTCCATGGGGGGATTGTGGGGGATACCCAGTAACAGAAAGTACATGAAGGCCTTTTGTAGACTTTAAAGGGACAGACACGCAAACAGGAGGAGACTCAACATAGACGTAGCCTTCACTTACACCTGACAACTGAGAAGGGTCCTGTCTCCTCTAGCTAGGCGTGGATGTGACAGTTTCAGAGAGCTGCTCCCTTAGAAAGGATGAGGTGGAAGTAAGGAAAGCTCTGAGGTTCTTGCTGGGAGGTCAAGGAAGAGAAGGTGATGATAAACATGGGTTGGGTCTGGTTGACACAATAGTTGTATCCGCAGTGCCTTCTGAGAATCTCTTCTTTACCAGTCAAGACATCTGTATCAGCAAGCTGTAATTCTGCCATAATCTTCTGCCTTGCTGGAACCATCCACAGCTCACCCCAGGCCCTCCTTTTGTAGAGGGAGGGAACCTACAGTTGCTTGGTATTTGCAGATGGGAAAGGCTCATGTTCATTCTCCCCTCCACGAATGCCTATGAAAGTTCTTCCCAGTAAGGCGGAGTCCAGAGGCCTGGGCTCAAGACGGCTTGGCCAGACAAATCCTTTTACTCCTCCCAGCCTCAGCTTCCTCAACTGGAAAATAAGCATGGTTATCACACTTGTGTCCCAAAGGAATTGTTGCAAAGGTAGAAGAACATTTAAAATACAAGCAATAAGAGGTGGAAGAATGGTTTTAAGTTAGTGAAAGCCACCCAACCTCTTTGGTCACAGTATTTATGGCAGCCATTCGGTGGCCCCAACTGACACTCCATAAAAAGTGCCACTGGGAGCAAATGGCTTGTGTTCTCTCACCTGGGACAGTTTCCAAACTGTCAGGACCAAGATGTTGCAAAAAGCTGAATGTTAACCACCCCCCCCAAAACTGTTGTCCTCCCACACCAGTGAGTGAGGTAGCAGATTGGCCATTGGTTCTTAGGGCCCAGCCCTATTAGAAGAGCAGAAAACTCATCCATACCTAGAAGGCATAGGCCTTAAGAGCCCACCGAACCCAGTGCCCTGATTCCAAAAACAGAATCTGAACTCACAGATGAGAAATGCCTTCCAGGGGCTCCAGCAAGTCAGAGTTGTTAAAAACATGAGATTATGATTTTGTGAACAAATCCTGGTCCCGAGTCAGGGATAGTTAAAATACTTAAAACTTTGTCAGCTGCAGTTTCCTCATCCTTTAGAAAATGCAGATAATAAACCTCTTCTTCAAAACCTTGTTCAGGGGACAAAACCAAAATAATTTTGTAAGCAGCTGAGCCTGGTACTTGGCACGGGGGCAAAAATAAGCAAATAGTAGAGAGTGTCAGGATGACAACATTCCAGATGGTGGCTCCGTATTTTCCAACTGTGGAACCTTGAGCAAGTTACATAAACTCTCCATGCCTCCGTCTTTCCCAAGTTTGCAGAATGAGGATAATAGTAAGACCTACCTCATAAGAGGGATATTTTAAGGATGCAACGACTCACTGTAAGACTTTTAGACTGAAGCAGGTGAGTGGTAGGTCCTTTGTTGCTGGCGGTGGATGGAAGTAACAGCAGTATTAACAATGGAAGTGGTAATAATCATGGCAACAAGAGTAGCGGCACTGATAATAGTAATGGAGCAGCAGGAAGGGTTCCAGGCCCAGGCTCGTCTGTGGATGAGTTGAGACCACAGCTAGAAGCCCCGCTTCCCCTGCTTTCAGTTTCCTTCCATCCTTGATGGCAGCTGTAGCCCAAATGGCTGGCCCCACCCTTCTCATGGGTGCCTGACTCCTGGGGGCATCAGATACCCCTCAAGTCTGGCCCTCCCACTGCTCTCCACACGGGGTTCTTTCTCATCCTCTCTCCTGCACAGGCAAGGGTAGAGAGGATACCAGGTTGGACCAAAGGTTTTCCAAGAGTCCAAGATTTTCCCAAGCTCTCTGCTAAAGAGAACAGCAAAGTCACTGTCATTGAATCACTTGTTTGACTTGTTCAAATCTACCAAATATCTACTAAGCATCTATAAAGCATCAGTTCTGATGTAGCCCTCAGGATCCAGTGAATAAGAAATAGCCTAGCCTTCTTATAAAGAAGACAGACAAAACTGTAATGGACAATGCACAACAATGAATGCTGAGAGGGACGGGGGTAAGGAGGCAGGGGAAGAGGGGATTGGGCTTTGAGTTGGTTAGGGCAGAGGAGATGCAGCTGGGAAACTAGACAATGGAAACAGGAATTGATTGCTGGAGTCAAGATGGAGACAGAATTCCAGCACAGGAGATGGGGTTCTGGAGGTAAAAGGAGCTGGAGCATAGTAGATGTCCTATGCCATGGTTCCTCTCATGGCTCATGGCAGACATCTCATATGCACAGCTCTTTAAGGAATCAAGGATGGGCACATGACATCAAGGGGGTCTATTTACATATGTGAATATGCAAATAATACATAAGCTGATGATAACCAGAAGTCCTCTTGGTTGGTCAGAGCCCTAATCCAAATGGAGGGTCCCGAGGAATCAGTCCTCTGTGGCCTTATTCATTTCTTATCTACACTCAGTCATCTCTGTTCAAGGCATTAGAGAGACAGATGAATAAACAGGCTTCTGAATTCCAGGGCTCATGCTCTAGTCATCCACAGAATACTGAAGTACTGTAGGATAAATGTCATTAGGACTGAGACTGAGTCGGTATTTGAATACTTGCAAACCAGTTGATAAATAGACCCTGTCGCCGCCCACTCTCCAGTTAACAAAGCCATCCCTTTCCTCCTCTGGTACCTTCTGGACCTTCTCACAGACCAGCAGCTAAACATTGATACCTGGCAGCCCTTCAGTGCCAAGCCTGGTTACTTTCAGATGGGGCAGTACTCACACTCGACCAGTTGTTGAATATTTTCAATATCAGCCTTGGAGGTGATAGAAGCAAATATAATATGTAATAGGACCACAGAGGAAGGACCAGACAATGTCTAAGAGGTCTTGGTGTCTGAGAGGACTTTACAAATAAAGGAACATATGAGTTGGGCTTTGAAGGATGAGTAGGAGCTCACCCATTTGAGTTGGCTGATGAATAAAGGGAATGGTAAATGCCACTACATGCCAGGCACAATCACATACTTTATACAGTTTTTTTTTTTTTTTCCTCATTTGATTCACAAAAAAATTCTTTGAGGTAGGTGCCATCATTATCACCATTTTTCAGGTGGGAAAACTGAGGCTCAGAGAGGTGAAATGACTTAAGTAGATAGCCCATTTAGGAGAAACAGGAGCTAGTATGAATCCTGGCTTATATCTCAGAAGCTTACTGTGATAGCCAGAGGGCCAACTGGATGACAGAGAGGTTGGTGGCTCCAAAGTTTGGTCACACCCTGTCCCTGTAGCAGAGGGTCCTCAGTTAAGTCTGCCCTAACTGGAGGGGGAATTTAAAAGGGCTGATCAAGACTGAAGTTAGACTCAGGAGAAGGAAGGCTTCTTTTCTCCTCCTGCTTCCAGCAAGCTAGCAGTTTCCACATAATCCTTGTCGACAAAAACTTGCACAGATTGAAAAAAAAAAAAAAAGCAGAACTTAGGCTCCATAAAAGAGGGCCTCATTTGTGAACAGGAGGAAGCAGGAGAGGCTAGTAATGAAGACAGGAGCTTTGGAGCAGATCCAAACACTTTGGAGTTCTTGACCTCATCTCCCTGTGAGACTGAGCCATAGCTCATGCTTCCCTGAGCACCTACTATGTGCTATATTCTACATGTGTCATCTCATGTATTTCTTATAATAGCCTTTCAAGGGAGCTTCCATTAGTATCCTTATTTTATAATGCATAAAGCCTGGAAAACTTAAGTAAAAGTACCTATTAAGTGGAGAAGTGAGGATTCAAACCCAAAACATCTGCCCTCAGAGTCCAGATGCTTAATGACCTAACCTCCCTTATGTCATTTTATTTTGCTGGACATTGTGTCCCCATCTGTACCTTTAACTAATAATCATATCTACTTCATGGAGTAGTTGTGAGGGTGGAATTAGATCAGTTGTCCATTTAGTTTTATATGCACTAAGCACCTACTATGTGAGTAGCAGTGAACAAAACAGACAAGGTTTTGCCTTCATGTGGCTTCTATTCTGTGAGCAAAACTCAGCCTGGCGCTAGGGACATAACAATATACAGTAGTTGCTAGTGTTAGGATTTGTCATCATAATGGCTTAATTAAACTTGCTCCTGATAAACCCAGACATGATGTTTTTGAAACATCCCTGGCCTCGAAAAGTTTAATTGTATCTAAGATCTCAGACGAACTTCAGAACAGCTCTAGGAGAATGACAGGAAGAGCCTCCTGTTTTGCATACCAGGGGAAATGAGCCTGAGGGAGTATACACGGAGGGCCCAGCCCTCCCACATCTGCCCCAGGTTCTTGTACATCCTGCAAAAGGCTTTGAGCCCTTCCTCAAACTGGGAAACTCACTATTCAGTTCCATTCATTGTAGTTTGGAGAGGAAAGGGACTAAAATGCGGAAGAAAGGGGCTGTGAGACTCAGGCATCTGTGGGACCAGTTATTCTTTTCAAATGGAAAATGGAATCACATTGTCAACTTTTACTTTTGCCAAGCAAGGACAGAAAAAAGAAAACCACCGTTTTCTATAATGAAAGGGACATGTACCAGGCAGAAGAGGGGGAATAGCCGTGGCCTCAGAAGAAAGGATGAGACTTTAAGTCAGATGCATTTAGCTGGATGAAGAACTCATTCCATTGAACTTATTTTCTCATTTGAATTTGGACTGGTGAAAATTTTGCCTAACTGGAGCCATGTAGAAATTTTCAAGAACAGGTAGGCTGAGGGCTATCAAGAGGGGCTTCTAAAAAAGGAGGGGCTAATGAGAAATGGTGAGGTTGAAGCCACCAGTCCCCTTCAGCTTCCTGATAGAGGGAAGGAGAGAGGAGGCTAGACTATGTCCCTGGGCCCAAGGTCAATTTTAGTGAACAGCCCGGTGGGACAGTCCCCCACCCCGCAGCCCTAAAGGACTTTGTCATCTTCCCACCATCCTCAGCAGATCCCTGTCTTTTTCCAACCCTCCCCCTCTCAAATGAACTCCTAACAGGTCAATGAATCCATTCTGTTGCTGTCTTCCTAATTAGTGTGCAAAGGAAGATGAACAACAGTGAGGAAAATAAACTTAATGTCTTTGTGAAACAAAAGGGTTTAAAAAAGGGAGAGGGGTGGAAATAACCAGAACCCTCTAGCTAAAAGCTCTGCCATGCAGCTCTACATTCACATGAGAATTTCCGGTCCCCCATATGGCAGGGAGGGAAAAAAAAATTTATAGCCATCTCTCTCCATGGGGCCATTTGAAGCTCAGTAAATGGACTTGTTCAGTTTAATTGGAATTCTCTTCTTGATTGTATTTTTGTAACCTATTAGGCCGTGCTGCCTCTTGATCTCGGAATTCAGCTGAAATTAAATTTTGAAGTGTAAGTGAGAGGTTGCCTTTTTTCCCCGTTCTTGATTAAATAATGATTTGAAACAAAAACAATAAATAACAGTACCAGCTTCCCTGAGGGCTGAGAGAGACTCCCAGTGAAACGCCGGGAGCTGGAGTTTGCGGTGGGGGATTTAATTACTTATTAGAAAAATCCAAGTGTTGATGCTGAGTATATTAAGGAAAAAGAAGAGGCAAGCTTATGAGTTCAAAAAAAAATGAGCTTCACATTGGTGGGGGCTAAAAGAATAAAGGGAACATACTCATTTGTTTAGTCCCAATGGCCATGAGTTTGTGAAAAGCAATCTGTCCTTTAAAAAAAATCTGAGATTGTCAATCATTACCCAAAAGGGAAGAGTGTGTAATAGCTCTGGGGTCTGGATAGGGCTCCATGGCTCTGGTCTCCTGGTTTATTTCACTGACAAAATCCAAGAGGGTTTGAAAGGGCAGAGATGAGGAAGATGGGAGGGAGAGATGAAATATACAAGATGCACTATGGTTGTGCTGCTTTCAGATAGACTCTGGGTAGCAATGAACACTTAGAACAGAGTCACAAACTTAGATGTCTCAGGGGCCAGGCCACTAATAGATACAAGCAACAGGGACCCCATAAGGCCTGAGGACAGAAAAGTGCGTGCCCCATCTAAAAGGAGAAGCTCCAATTACTCACAAACTGATTATTACAGAGCAGGAATGTCGACTCAATCTTGCCAGATCCTCTTACATTTCAGCATGAACTAGAAATGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTGGGAGTCGGACACGACTGAGCGACTTCCCTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCCATGGGGTCGCACAGAGTTGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGCATGCCCAACTACAATGTTGACAGTTCCTTCAAATTTATTGGCGAACATAAATTTGTTTAGCCAATAAGTGCGCCAAGGAAAGCATAACTTAAAACTCTGAAACAAAGCATAACTTGGCCTGTCAGTTTTCTAGGGGTAATTTGGGGTGTTGAGACAGATGCTGTCCATTTATGTCCCCACCCCTCACTTCACATACTGCCAGTGTCCAGCTTCCAGGTATTGCTCTCTGGCTGCCAAAGACCACTTTGCTTGGCTGGGCGGCAGTTTGAAACTGCTGGAGAATTGACACGTGTTGGGGGAAACCTTTAACCCGTGAGTAGTGAGGAACTGGTGTATAAATATCCAGCTCCCTCCTTGGTTGAGATGAATTCTGGAGCCAGTTCTGTCCTCTCTCTTTTCTCTCCCCCAGCTTACTGCCCCTCAAATAAGATTCCTTGGTCTCAAATAAACTTCCAGCACTCAAATTCCTGTCTCAATTTCTAGGAGGATCCATATGGAGACAGGTGTTATTTCACTTTGTGATTAAACAAATTTTACAGGGGCTGAATTTTTGTGCAAAGCCCCCAAAATAGGCCTTTGTGAAGACATGGAAAGAAGGACACGACTGAGATGGAGGAAGGGTTCAGAGTGGACCACAGAAGAGAAACCCGGTGAGAGGGTCCCAGGCCTTACATAGGGGTCCCAGTACCATGAGTGCATTGTTCCTGCACAAAAGTGGATCTAGAATGACTCCTCCCAGTGAGCCTCTTGAGGACTGTTTTGCAGCTAAGATGGGGATATAGGAGCAGAGAGCAGTTATGTGCATAGAAGAGAAATTTCCAAGAGGTGAAGAAGAAGATGAATTGTGAGAGGCCTGTTATCAAAATGAAAGACAGGGAGGAGCAAGGGGGGCCATCCTGTCATGTCAGCGTCCAGTGGGCAACAGTTTGCCTCTTCCATGGCAGAGTGGAAGTGAGTATCTGATGAGGAAGGAGACACTTAGGGACAGGAGGCAAGAGCACAGAGGCCTCTGTTGTCTGCCTGTCATTATGTCCTTGACTTGAAGGGCTCCTCTGCATTGTCATGGCACTCCCTTACACACACACACACACACACACATACCCTACAGTCTGCCTTTGGCCCCCCTGAGCTATATCTTCCCTCCTCTGGAGAAAGAGGAATCCAAGACTAACAGGTCATTAAACAATCTGGACATCCCTAATGAGTTTATGAAAATATTTCTATCATCTGGAAACAGGGGCAGAGCCCGCTGAGACTGGTAAAGACACAACCAAGTAGAGGTCAGCTGAAGGTAACAGAAATGCACGTCTTCGGGCTCTTCCCCCAACCCTCAAAGGAATCCTTAGAGCAGGTAACAGGTCAAGATGTGTGTATCCAGGACCTGCCAGGCATGTTGCTATGCTAGTTGTGCCCTCTCCAAAGGCTTTGGAGTTAAACCCCACTGACTCTCCATTTGTCGAGCCAGCTATGGAAACAGACATGGGGCTGCTTCAGTCCAGAGAAAGGTGTATCTATTTTTCTAATTTGTCTGGCCAGAAGGGGCACCATTTTCGATTTCCTGACCCAGGAGGAACACCATTCTAGCACCCAAATAAAGTCACTGCATGGGCCAGAAGCCCTGTTGAGCGCAAAAGACCAGATCCAGTTCATCTTTTAACCTGACCTCCCAGAATAGCAGAAGGTGGCAAAGGAAGTAAAGAGACCCAGCACTGCTTGTCTCATCTGGAAGGCTCCTCAGGTCTGGAGCTTCTCACCTTAGCCTGGAGCTTATGCTGTTGAGCATCCGTAGACTCTTGCTTTCTCTGAGATTGTAGGCCCGAGGAGGGCTGGGGGGAAGAGCTTTCCTTCTCTCTGCCACTTACGTGGACCTAAAACTTGATTATAGAGGTTCTCTGTAGCTCACATGCCCAGCCCTGAGCTGGTCTCAAGACCCCAACTTTCAGCCCATCCAGATAGAGACAGGTAATTATCCCACCCAGTAACAGTGCTGTGGCAGACAAAAGCTACTCATTTTTGAATGAGTGAATGGATGAATGAAAGAATGAATGAAATAGAGTTTTGTGTTATCCTGGCCTGGGACTCAGAGAAGGCTTTCAAGAGGAGGTGATATGTAAACTGGAGGATGAATAAATTTATCCATGTCAAGTAAGGAACAGGGGGAAAATGTTCCAGGTGGAGGAAATGGCATGTGCAAATGGCCTGGGGTTGGGAAAGCAAGATGTGGTGGCAAAACCAAGAAAACTTCCCAGTTGATTGCCTTAAGGTTGTACAAACCAAAACTGGGGAGGGGCTGTATGGAAGAGATGAGGTTTGGGAAGGACACAGGATTGGGTTGTAAAGGACACTGTCACGCATGTCAAAGAAATGGGACTTTTAGAGAGGTTGGTATTCTTAGCATAGGGTCAAGTTAGTGAGCACATTTCAGTAGTACAATTATCTCTGTTTTCTGGCAATGATAGGAAAGCATGATGCCTTATACAGTTCTCAGTTCTCTTACATGTGGATAGTGATTGTGGTCAGGTGGAGAGACACTGAAAGTGTCACTGTGAGCTCAGTGTATGGGATTGAGAATGTGAAAAAGGCAAGGTCCCTGTCTATATCCATTAGCCTCCAGGGGCCTTACATTCAGGAAGTCCTTCTCCCTGGGTACCCATGATGCACCAGGACATATGCTTTGAAATTAGTAGTCAAGGTGGAAACGAGTACCTGGGTGGAGAAAAGCCCGGCCTGGATGCCTCCAGGTAGCAAGCCACAAGATAACGAAATCCATTATATTCATAGTCCAGCCTGGCTTCCTTCAGGAAGGGCTTACCTGAATCACTTGTGATACACTGGCTACCAAACACTTATCATCTCTGAGGCAAAGATTCCATGAGCTCAAACCAAACCCCAGCCTGAGAGTCCAGGTCCCAGGGTCCAACTGCCTTGTGTGATGCTTTCTCATTCCTGACAGAGGTGGTGGAAATACACGTGTGACCACTGAACTCACAGAGGTGGTAAAGATTTGGCATCCAACCTGCAAACTAGAAGACAAAAAGGAGCTGAATGGAAAAGGGGTCTTTACATTAATTTTAAAAGAAATCTCACACTAGAAAGCCCCACTTGGGCAACCTTATTTTAAGATCCCTTGTCCGAGAGCAAAAGTAGCCAGATGTCAAATGGGAAGTGGCAGCCGCATTGGGTGAAAAGTTGGTAAAGTTGGACCATCACCTTGTCGGTGTGCAAAGTCTCCTGGGAGAATCTGCAAAGGAAGTTCTGCCTCCCCAACTCCAGGAGCTGATATCCTGAGCTGGTGGAGCCATTGCTATTACTCTCACTGTTTCAGTGTCTCTGTATCTCATGCTCATGACCAGTTGCTGAAAATACAGAAATATTTCCTCAAGAAATCCCTAGAGCCCCCCTTCTTTAGACTCAAAGTTCATGGGAGAAACGGGGCGGGGGAAGTAGGCTTTTGATGGCGAGACCTATGCTAATACTTGCAGGGCCTGGGACAAGAGTATAGAAGGAGAAGCCACACACTAAATGTTTTTAAATCAAGACAGCACACTTAGGTGAAGTATGTTCTCCTATCTTGGCAAACATGTCTTTGAAATGATCGGGAGAGTCAGATTTGGATTTAGAGCCTTGGACCCCTCGGAGTGCGGACCACAACATGACAGTGTGGAGAGAATCTGCCCCAGCGCCCTGGTCCCTCCCATTCTCCCCCTACATCTTGCTTCATCACCATGACGGACCTCTCACACATGCACATGGACACCTCAGTCCGAACATCCAAATTCCATTCAGATAGCCATGTTTGGACCTACAAATGTGCACACTTGAAATGTGGTCTATCCCTGGGAGAATAGATCATGGAGAGCCTGAAGAGACCCTGGAAGGGGACTCAGCAGCCGGACTTCAGGTCTCCAGAGACTAAATCTCAAGGAAAGGTTTCCAGGTAACCCCTCAGATTTCTCCACCCATGGGAATGGTTGTCACTGGAGGAGACCCAGGCAGAGGTCCCTCTTGCCCACAGCTAAGCATGGTATATTGATGGGGACCAGAACCGAGCCCACTGTGTCATCTGAGCTGAGACTGGTCTGAATGTTTAAAGAAAACCATCCATTATACTTCTAAACACTCTATAGCCTTCCCAAGGGGGCTGGCTGTCCATCACCTCCTTTACTTCTTCATCTGTCCTAGATCAGCCACACCCAGGATCCTGGGGGCCCTTCGGCATTCCCAATCACCCCAAAGCCAAATCTCCAAGCCCCTCCCAAAGCTGTTTGTTACAAGCACACCTTCCCTGTGCCCCACCCCCCATCTTGACATCTCGGATTGATGCAAACTCTAGCCACCATCTGCATTGTCAGCAAGGGTTTCTTGATCCAACTTGGGCGTTAAGGGACTGACAAATTTAGTGTTGATGGCTTGAGGTCCCCTTACTGAGAAAGCCAACCAAAAGTGATGCTTCACCTGTCAAGAACACTGAAAACCCAAAGTCCAAAGTTCAGGGCCAAGTGTGAGGATGTACAGAAAGGTGTGTGTTTTTACTTGTCATTTGCGACTCTAATGATGGACTCACCTTGCCCGCTCTTCCCTTTCTCTTACACCTTACCTACCTACTAAAGGAGGAGTTCTTGCTTGGTAAGTGGATATAATCCGCAAAGACATGAGAGAATTTATTAGAAGCCACTCGAGAGCCTTAGCTACCTTCTCCAGGGGGAAAGGACACACGCAAATATCCGTAGAGAGCTTTTTGTTTGTTTGTTTTCAGTCAGACAATTTGACTTCCATTTTTTTTGTCCCCCCACCCTTTCTTTTCCCCTTTAGTTGAAAACTACTAAAATATCATTTTGTGACCTTGACTTTATATTAAAAAAAAACCCTCTCATCTTTATTTCGTTTCTTTTCCCCATGTGATATTCGTTTAGGGTTCTATTTGGGCAACTTTTTCTTTAAGAGAAAAAAAAAGTCAAATTCATTGAAGATTTGGTTGACATTTAAAATTTTGGCTTTATCTCCTTTTGTCGTTTTTAAGTTTCAAGATGTATTTTTTCAGGCCCATAGCTTCCTTTCTTTCCCCCTACCTTTCTTTATTTTTATTGTTGTTTTAGGTTAAGGGTGTTTACACACACCCCCTTTCTTTTAAGTTGTCTCTTTTGTTTGAGTTAATTCATTAGAAATTTTGTATTATTTCCTTTTTCTTTTGTTTAATCTGGATCGCATGCTTTTTCTCTGCATGATACCTAAATCTTCCAGTTATCCTAGCAGGGGGTTTAAAAAAAAAAAAGATCTCCTTTCTGTGGTATTCTTTCAGGAATTTGTGCTTTTGTTTTTTGGCGTCTCTTCTTTCCTCTCCTCTCTCTCTTTCCTTTCGTTACAGTGCATCATGATGGTAAACATTTCTTGGTTATTTAGACGCAACCCACAGGCCCGGCACTCAGCAGTGTCCAACGGGTGTTTTTGCTTTCAG
Seq C2 exon
ATCACTGGGTCGGGGTCTGCTGCTGACCTCTTTACCAAAACAGCCAGCCCGCTCACCACCTCCCGAGGACGCTCCCAGGAGTATGACTCAGGCAATGACACCTCCTCGCCACCCTCCATGCAAATCAGCTCAACCAGGTCTCGGGGTCAAGAGAAGGGGAGCCCCAGTGGGGGCCTAAGCAAGAGCCGGGACCCCAACAGTGGAAACACCTCTGATTCAGGGAACTCTTTCACCACTTCCTCACCCCAGAACAAGGGGGCCACTTTGGAGAACCTCTCCCCCACCAGCAGGGGCAGAGAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008676:ENSBTAT00000011438:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=0.927
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 27984743
Likely leads to nuclear retention and reduction of SRRM4 protein levels upon prolonged neuronal activity.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development