HsaINT0159207 @ hg19
Intron Retention
Gene
ENSG00000139767 | SRRM4
Description
serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:29389]
Coordinates
chr12:119568483-119583490:+
Coord C1 exon
chr12:119568483-119568639
Coord A exon
chr12:119568640-119583185
Coord C2 exon
chr12:119583186-119583490
Length
14546 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
ACGGGTCTTTTTGCTTTCAGATC
3' ss Score
10.43
Exon sequences
Seq C1 exon
GCACCGCGGCCGGTCCCCTGAGGAAGGGCAGAAGTCCCGCCGAAGGCACTCCCGCCGCTGCTCCAAGACCCTCTGCAAGGACAGCCCTGAGGCCCAGTCCAGTCGCCCGCCCAGTCAACCCCTCCAGATGCTTGGCTACCTGTCAGCCAGGGGTGTA
Seq A exon
GTAAGTATTCTTCACAGCCTCCTCTGCCAGCCTTGGCCACGACACTTGGGGAATGTGGAGGCACAAGTTCAGGGCAGTGTATGGTACACTTTAATTCAATTTCTGACAAAATATCCCACTGGCTCCAGACCTCATTAATGATGAACCAAATGATCATTCACCAGACTTTGGCAACACTGGCTTGGGGATTTTGGGGGGCAGGGGGAGAAAAACTAAATACCCAGTCTTTTTATCAGGGGAATGTTGACAAATAAATACCTGTCTCCAGAGTGATATCTGCAGGAAGACATGTTTAAGATACCATAGGAGGATTTTTTGTTTGTTTGTTTGTTTTTGGGAGAGAAAGGAAAAGAAGGGCTCTTTGACATAACAGAGGCACTCCAGCTTTTACATGAAGTCTGCATCTTTTATGCCAGCTGGCTGGCAGCATTGGTTGGCAGCTGGGATTTCATTTCACCTATAAACATGACCTTGAATTTATATGAGAATTTTCTTCCAAGGAGGTCATAGCTCTTGACCTACATCCTCTCATGTAGCCACACAAGGTCTTGGGAGTTGAGGGCACAGCTGTTCTCACTAGTCCCTTCTACAGATAGGAAAGAAGAATCAAGGCTCAGAGAGGTTAAGGGCTGGGGTAAAGCCCCAGAGCAAGGCAAGAGTTAATCCAATTTAGCAACCCAGCATTGAATAGAATTAAGCAGTGCTGCCCCAAGTCAACAAGGACAAGCTGGAATTTGACTTCATATAGTTTGACACCATGAGCAAGAGACTTAGAAATGGATCTGAATTCAGTCCTAGCTTGGCCACTTCCTAGCTGTGTGGCTTTGGGCAAATTACTTAATCTCCATTTTCTCATTGGTAAACTTGAAGTAAATACCACTTCCGTATGGAATTGTTGGGACTATCCAATAAGATAAAGTACGTGAAGGCCTTTTGTAGACTCTAAAGAGACAGACGAACAGGAAGAGAGTCAACATTGATAGGGTCTACAATTGCAGCAGGCAGCTGTGAAAGGGACTGTTTTCTCTAGCTACATGTGAACTTGAAAATTTCAGGTAGATGGTGCCTAAGGAAGGGTGAGGTGGAAGCAAGGAAAAGTTCAGGGGTGCTTGTGGGGATGTCAAGAAAGGGAAAGCAATGACAACGGTTGGGCCTGGTTGACACAATAATTATCTGCAGTGCATTCCAGGAATCTTCTTTACCAGTCAAGGCACCCAGCATAACCAAGGTCTAATTTTACCCAAATCCTCTGCCTACCTGGAACCATCTGCAACTGTCCCCAGACTCCTTCTTGGTAGAGATGTCTGTGGTTACTGAGTCCTTGCAGATGGCAAATGCCCATCTGCGTACTCTCTCTCTCACAAATATCCAAAAAGGGGTCTTCCCAGCAAGATAGAAAGTATAGAGGCCTAGATTTGAGTCTTGTTTTGGCTGGACTTGTCATTTTACCCCTCTCAACCTCAGCTTTCTCACCTGAGAAATGGGCATGATTATCCCGCTTGTCTCCCAGGAGGATTGTGGCAAAGGTAAAGATAAATTTGAAATATGAGCATTAAGAGGTAGAGGAATGTTTTTAAGTTAGTAAAGGATGCCTAATTGCTCTGGTCATGGTATTTGTGGTGGTCCATCTGGAGGTCCCAATTGACCCTAGCTAAAAAGTGCCATTGGAAGCAACTGGCTTATACATTCTTACATGTCTGGGATGGTTTTCCAACAAGATATGTCTGTCAAGATGTTACAAAAAGCTGGGTCTGTCCTCCCACACAAGCTGGGGAGGTTACCAGATTGGCTATTGGTAGTTTGCTTTCCTAAAACACATGGGTTCTTAATGGCTTTGAGGTGCAATGCCTCACTGTTCTTCATGAGCCTGGCCCTATCAGAAGAGCTAAAAACCAGGGTTCACCTGTACCTATAAGAGAGGCCTTAAGAGCTCAGCTAGCCTAATGCTCTGATTACTAAGAAAGGAAACTGAGATTCACAGAAAGGAAATGATTCACATGGGCCATGGCAAGGCAGAGTTATTTAAAAACATGGAATTATTAATTCGTGGTCACATCATGTCCCTGAGATAGTAGTAATTACTTAAATGTTTCTGAGCTGTACTTTCCTCATCTGTAAGAAATAATAATAAAATAATAATAATATAGATAATAACAGTCTCTTCTTCAGAAGGCAGCTGTTGAGCCCAGTACTTGATACAGGTGCAAAACTTGACAAATAATATGATGACAACATTCCAGATCCTGGCTCTGCACTTACCAGCTGTGACTCCTTGAGCAAGTTTCTGTGTCTCAGTTTCCTCAAAAACTGCAAAACAAGGATAGCAATAAGACCTACCTCATAAGATTGTTATGAGAATTCAATGACACAATGTAAGTAAAAGTTTTAGAGTATAACAGGCAAGAAGTAAATGCTGCATAATGCTTACTGCTTGTGATAGTAACAGCAGTAGAAGTAATAGTGGTGATAGCAGTGGTGATAGTAGTGGTGGTAATAGTAGTGGTGATAGTGGTAGCCACAATAGTAGTAGCAGTGGTAATAGCAGTGGTAGTAGTCATAGTAATAGTAGTATTGTTCCAGGCATAGGCTGGGCTGGGACTAGAGCCAAGACCCCTGCTTCCCAGACCAATTTCTTTCTATCCTAAATGGTAGCTGCAGCTCACATGGCTACTCTGCCCCACTTAAGGTTGCCTGGCTCCTGGAAGAATCACATGGCCCCAGATCTGGTTCTTTGAGTACTCCTCATGCATGGCCCTTTCTCGTCTTCTCTATTACAAAAGCAGAGATGGAAGAAGTTTCCAGATTGGATCAAAGGTTTTCCAAGGTTCCTAGCCCCAAGTTTTTCTCTCTGTTAAAGCTAACAGCAGAGTCATTTTCATTGAATCACCTGTCTGATCATTCATTTAAGTCTACAAACACCTATGGAGCATCTACAAAGGGTCAGGCTCTGACTTATCTCAGGATCCAATTACTAAGAAAGAAATAGCCTGTGCCTTCTAATGAAGCGAGACAGACAAGTTAAAAACAGTTAAAGGCAATGCACAACAATTGGTGCTCAGATGCTTATTTGGGGGTGCAAGGTTAGCAGACAGGGGAGGGGACTGGGATTAGGGTTAGGGTTGGGCAGAGAAGGTAACAATTACCTGAAAAGCTAAGGGTGAGCCAATGAAGGGGGAAAATAAAGACTAGAGTTGAGGGTTGAGATAAAATTCCATGGCAAGATATGGGCTCTGGAGGTAAAGAGGAGCCCAAGCATGAAGGATTTTCTATGCCATATTTGGTTACAGATATTTCACATGCACAGCTTTTTTAAAAACTCAAGGACAGTTGCATAATATCAAGGGGCTTATTTACATATATGAATATGCAAATTTGGGGGTTGGTTCTTAATGGAAATCTTAGTTGGTGAGCTAAAGCTAACCTGAGGCTCTCTTGCTTGGTCAGCACCCAAATCCAAATAGAAGATCCCAAGACAGTTTACCTCACACATGGTCCTTATCTTCACTCCACCATCTCTGTTCAAGGTACTGGGGAGGCAGAGAGATTGTAAAAAAAAAAAAAAAAGAAGAAAAGAAAAAAAAAAACACTCTTCCTGAACTCCAGGGGCTCACAGTCTAGTAGTCAGAAGAATGCTGCAATATAGTGTGATCATTTTGTAATCAGGGCTGGGATTGAGTCAGGAGCACCAGTACTTTCTCCAGTTGTTAAAATATTCAAATACTTTCATGCCAGTTGGTAAATAGGCCCTGTCATTACCTCACCCAACCCCAGTCAACCTAGCCATCCCTTCTCTCCCTTGGCACTTTCTGGATCTTCTCAAAATCCTGAAACAGAAAAGTGACACTTACTTCCCTTCAGCATCAAAGCCAGCTTCCTCTGTGGTGGGGCAGTACCCACAACGAACTAGTTATCGAATATTGTGAATGTCACTCCTGGCAGTGATGAAAGCAACTACAGTGTGTAATGGAAGCACAGAGTAAGGGCCAGACAATGTTGTCCTGATGTCTGAGAAGGCTTTACCAATAAAGGATCATTTGAGCTGGGCTTTGAAGGATGCATAGGAGTTCATTGGGTTGCAATTGTTGATGGACAGAAGGAGGGGAAAACACCACTATGTGTCAGGCACTGTCACATACTTTACATAATTTTTGCCTCATTTGGTACCTAAAACAGTTATTTGAAGTAGGTGCAATTATTATCACCATTTCGAAGATGGGAAAATAGGCCCTGTGAGGTGCTGGTACCTAGGAATGTAACAAAATTGGGAGAAAGGGGAACTGTTATGAGTTGTGGTTTGTGCCTTGAAAGCTTACCCTGATAGTTGGCATGGAGGGTGGGCTGGATGATGGGAAGGTGGATTGGATGATGGAGAGGCTCATGGCTCCAAGGATTAGCCAAGCCCTTTCCCTGTGATATGGGGCTCTCTATCAAGTCTATCATAACCAGAGAGGAATTCTAGAAGGAGGCTGATCAAGTCTGGAGCTGGGCCAAAGATAATGGCAGGTTTCTTGTTCCTCTTCTTGCCTCCAGCCTGGGCCAATAGTTGCTAATCCTTGTCAACAAAAACCTGTACAAATGTCGAAACCAAAAACAATAATAATAAAAGCAGAACTCGTAGTCCATAAAAGAGGATCTCATGAAATTTGTAAACTGGAAGAGGCAATATGATTAAGACATGAACTTTGGAATGGATCTGGGCACCCTGGAGTTCTTGATCTCTCCCTGTGAGACCCTAGGTGACAGCAATAACTAATGCCTGTTGAGCACCTGCCATGCACCAGGTGTTTACTGAGCACCTACTATGCACCAGGTGCTAGGCCAATTCTTTACATGTATCATCATCATTGCATTTAATTTTATAATAGCTTTTCAATGGAGCTTCCATGAATATGTCCACTTTATGATAAGGAAACCCAGCCAAGAAAAAATAAGTAAAAAGCAGCTATTCAACAGAGAAGCTAGGGTTTGAATCCAGGGAGTCTGACCTCAGAGTCCACATGTTTAATTACATGACCTCCTCTGTGCCATTTCACGTCTTTGGGCCTCATATCCTTATCTGTGCCTTGGGCTAATAATAATCATACCTACTTATAGGATTGTTATGAGGATAGAGTAAGATAAGGTATCCATTCATTTCAAAAATAAACACTAAGCATCTACTGTCCTGCCCTCATGTAGCTTATGCTCTGTGTGAAAAAAAGTATCCCAATGCTTGGGACATAACCCTCAAAGTATCCTAGTTGCCATAATATTTTTTGTCATCATAGCAGCTTTACTAAACTTATCCCAAATAAACCCAGATATGATGTTCTCGGAGTATCTTTAGCCTCAAAAAGCTGAATCCATCCAAGATCGCAGGTGAACTTCACAACAACCCCAGGAGAAAGGCGAGATGGGAATATGCTTCCCCCTTTGTAGATAGGGAAAATAGGGCTGAGGGAGAATCTGGATGGCTCAGGCCTTCTGACCCCTAGTCCAGGTGCTTGCACATTCTGCAAAGCCTTTGAGCTCTTGCTCAACTGGGAGACACAATATCCAACATTCAATACCATCATCATAGTTGAGAGAAGGGAGGAACCAAAGTACAGAAGGTGGATGAAATGAGATTTGGGGATTTTCTGGGCCATTGGTTTTTGTTTGTTTTGTTTTGTTTTGTTTTGTTTAATGGGAAGTGACATAGCATTGTCAACTTTTACTTTTGCCAAGGAAGAACAGAAAAAACCACCATTTTCTATCACTAAAGGGAGATTTTACCATCAGAAGAAGTAGGAAAGACACGACCTTGGAAGAAAAAAATGAGTCTTCAAATCGAAAGTATTTAGCAGGATGAAAAACTAATTACATTGAACTTATTTTTTCTTGTTTCAATTTGGGCTGGTGATAATGTATCTAACTGGGTCCCGGTGGGGATTTCTGAGAACAGGTGGGCAGGGGGTCCTCAGGAGAGGCTTCAAAGAAAGGGTGAGCCTGAAGCTGTCATTCCCTCTGGCTCCTGCTTAAGGAAAATAATAAGGAGGCCAGACCACCTCTGCCTACCAAAGGTTCAATGCAGTGCACAGCCCCATGGGATAGCCCCAGCCCTAAAGGACTTTGTTGTCTTCCCACAATGCCCGGCACATCTCCCTTCTCTTTCTCCATCTCCTCCTCCTCCCAGATGAACTCCTACCAGGTCAATGAATCCATTCTTTTGCTGTCTTCCTAATTAGTGCACTAAGGAAGATGAACAACAGAAAGGAAAATAAACTTAATGTCTTTGTGAAACAAAAGCTTTTTTTTTTTTAAGGAATAACCAGAACCCTCTAGCTAAAAGCTCTACCATACAGCTCCACACTCACATGAGAATTTCCAGTCTCCCATATGGCAGGGAAGAAAAAAAAATGTATAGCCGCCTCTCTCTATGGGGCCATTTGAAGCTCAGTAAATGGACTTGTTCAGTTTAATTGGAATTCTCTTCTTGATTGTATTTTTGTATCCTATTAGGCCGTGCTGCCTCTTGATCTTAGAATTCAGCTGAAATTAAATTTTGAAGTGTAAGTGAGAGGTTGCCTTTTTTCCCCGTTCTTGATTAAATAATGATTTGAAACAAAAACAATAAATAACAGTGCCGGCTTCCCTGGAGGGCTGAGAGAGACTCCCAGTGAAACGCCAGGGAGCTGGAGTTCGTGGTGGGGGGATTTAACTACTTATTAGAAAAACCTGAATGTGAACACTGAGTATATTAAGGAACAAGGAGATGAGGCGAGGTTTGGAGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATACTGGAGCTTCACATTGGAAGGGGTTGAGGGAGTAAAAAGGGAAATAGTTCACTTCCCCCCAATGGCCTTGAGTTCATGAAAAACATTTTGTATTTAAAATTTTTAAAATTAAATTTTAAAATGTCTGAGATTGACTACCCTGACCCAGAGAGAAAGAGTTTATAATAACTCTGATGTCTGGATATGGTTTAATGGATCCGGTCTCCTGGTTCCTTTCATTGACAAAAGTCCAAGAGGGATTAAAAAGGTCGAGATGGGAGAGATGGAGCAATACACTTCACAGATCTGGAAGGAAGAGATGAAACATACAAGATGTACCAGGTTTATGTTACTCACAGAGGGATCAGAGTGGCAACAAACTTTTAGAACAGAGGGTCTCCAACTTAGAGGTCTTGGTGGCCAGCTAATAGATATGAGTAACAATGATCTCGTGGGGTTTGGGGTCCGGAGAGCTCATGCCCCATCTAAAAGGGGCAGCTGTAATTGCTCTCAGCTGATTCTTGCCAGGCAGGGATTTGGGCCCAGTGTTGCCAGATCTTATTTTTCAACAGAAACTGGAAATGGGGTTGTTACATGAAACCTCCCATTCTACCAACGTTGGCAGTTAATTCCAGTTTACTTCCTGACATACTAAGGGAGCTAACGAAAGCATGTCTGAAACAAAGCATAACTCGGCTCACCGGTTTTCCAGTGTTGACCTGGGGTACTGAAGCAGATAGTGTCCATATATAGATCCTCACCCTCTGCACTTCGGGGCGCATGGCTGACTTCCAGCTTCCAGATAGTATTCTCTGGTGCCAAAACCTATTTTCTCTGCCTGTTTGGCAGTCTGGACATACTAGAGAATTGATGCTCCAGTGTTCAGCCTTGAGTGATGGGGAACTGGTGTATAAATATCCCAGCTCCCTCACTCCTTGGTTGAGGTTAACTCTGGGGTGCATGTTCTACACTGGTTCCCAGGGTGTCCTCACTGAGATTAAGCATCCACTGCCCACTGTAATAGCTGGTTTGATAATGCATCTTTTATTGTCTCCCTCTCTCCTCTGCATCATTTCCACACTCCATTACAGAGGTTCCTTGCCCTCTCAAATTATTAGCACTCATTTTCCATCTCGACTTCTAAGAATCCAGATTAGACAGGCATTATTTCATTTGGCCATTAAGTAGATCTTGTGGAAGCTGGATTTTCATGCCATACCCCGAAAGTAGGCTTTTATGTAGACATCATGGAGGGTGAGGGCTGAGATGGAAGAAGAGGTAAAATTGGACCAAGGAAGAGAACCCTGGTGTAAGGGTTCCAGCTCTTAAAAGGGGGTCCTGGGTACCTGGAGGGCATTATTACCAGATGACAGAGGATCTGGAGTGGCTCTTGCTAATAAGTATCTTGGGACAAAGAGCAGTTGCATGCACAGAGAGAAACTCCCAATGCATGAAGAGGAGCTCTTCAAAGATGAATTATGAGAGGCCTATTATATAAATAAGGAGGCAAAAAGAAGCAAAGGAGAACCATCCTGTTGTATCAATGTCGGAGGGGGGTGACTGTTTGCACCTTATGTGCCAGAGAGAGTGGCTGACTAGGAAGGCAATACCCAGGGATGGAAGGGCAGAGGCAAGACCATGGGAGGCCCCTTTTTCAGCCCATCAGATGCTCACAACTCTAATGTCTCCTCTGCACTTCCACGGTCAGACCTCTCCCATCCTGTCTTGGGCTTCCCTCAATTGTATCTTCTTTCCTCCTCTTCTTGTGGAGTGAATGGAGAGCTCTGCAGAAGGTGGAGTCTGGGGTTTAGGAGACCATTAAACTATCTGAATATCTCTGATGATGACTTTGTGAAAATGCTCCTACCACCTGGAAGGATAAACAGAGCACATCAAGATTTGTAAAGACAATACCAAGTAGAGTTCAGCTGAAAAGAAGCAGGAATGAATGTCTTCAGGTTACCACCTCCTCTCTGCCAGAGGAATCTTCTAAGTAGGCCAGATGGAGTAAGACGATTTACTCACTCCAGATATACCCGCTAGGGACATGATGTCATGCTGGTTGTCCCCTTTGAGAGGGTGACCAGCATGGAGAGCAACTGGCAGATCAAAACCCCCCTGCCCTCCATTTACTAAGCTCTGAATACAGATGCAGGACTGCTTCAGCCCAGAAAAAGGTGTACTATCTCTTTTCTAATCTTTCTGGCCAGAAAGGGCACCTTTTTCTAATTCTTGACCCATAAGGAGCACCTTTTTTTTTCATTTAAAAAATTTAATTATTATGGCTACATAATAGTTGTATATATTTACAGGGTATATGTGATGTTTCCATACAGGCATACACTATGTAAGGATCAAATCAGGGTAATTGTGCATCCATCTCCTCAAGCATGTATCATTTCTTTGTGTTAGAAACATTCCAATTACACTCTTTTAGTTATTTTAAAATATAAGAAAAATTATTGCTAATTCTGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGAACAGATCACCTGAGATCAGGAGTTCGAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAAAAATTACCTGGGCGTGGTGGCAGGCACCCGTAATCCCAGCTACCTGGAAGGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGGTGAAGGCTGCAGTGAGCGGAGATCATGCCATTGCACTCCAGCCTGGGCAACAGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAATTATTGTTAACTATAGTCGTCCTGATGTGCTACCAAATACTAGATCTCATTTATTCTCTCTAATTGCATTTTTGTACCCAGTAACCATGCCTACTTTATACTCCACTTCCCACTACCCTTCCCAGTCTCTAGTAACCATCATTCCATTCTCTATAGGAGTACCTTTTCCTAATAGGAACAAAGTCACTATGCAGGCTGGCAGCCTTGCTGCATGCAAATGACTGAACTCAGTCCATCTTTGAACTTGAGCTCCCATAGTAGCAGAGAGTGGAATAAGAAGTAAGAAGACCCAGCACAGCTTGTTTCATCTGAAAGGTTTTGCAGGTCGGAAACTTCTCACCTGAAGGCTGCAGCTTATGCTGTTGAGAATCTGTGCAGAGCCTCTGGGTGCTTTCTCCCAGGGTCCTCGGTCTGAGGGGTATCAGGGGGAATGAGAGAAAGAACAGAGGGCTTTCTTTCTCTCTGCCAGGGGTCTGGACCTCAAACTTTCTTCTAAGACCTTCTGTTCAATAGCACAGTAGAGTGGCTCTAGTAAACAATAATCTATTTTATATTTCAAAGTAACTAGAAGAGAATAATTTTTTTTGGCTCAGGCTGGAGTGCAGTGGTGTGATCTTGGTTCACTGTAGCCTCCACCTCCCAGGTTCAAGAAACTCTCCCACCTCAGCCTCCCAACTAGCTAGGACTACAGGCACATGCCACCACACCCGGCTAATTTTTGTAGTTTTTGGTAGAGACAAGGTTTCGCCATGTTGGCCAGCCTGGTCTCGAACTCCTGACCTCAAGTAATCCACCCACTTCGGCCTCCCAGAGTGTTGGGATTACAGGCGTGAGCCACCATGCTCGGTCTTAGAAGAGAATAATTTGAATGCTCCCAGCATAAAGAAAAGATAAATGTTTAAGGTGATGGATATCTATCTCTATTACCCTGATCTGATCATTACACATTATGTGAATGTATCGAAATATCACATATATTCCAAAAATATGTACATCTATTATATATCAATAAAAATAAATATTTGATTCTAGAGGTTCTCTCGAGCTCACACACCCAGCCGAGCTGGTCTTGAGACCCCAAGCTTCAGCCAGGGGTCTCCAAGTTTCCTAGAACGATTCTCAGTGTGATGGAGGCTGGTTTCTTCTCAAATTCCCAAAGCTGGCAGACACCCAGCTGGATCCCACCTGGGCCTGATCACCCAGTTGTCTCTACAATAAATGAAGTCAGGCAGGCCCACAGAGGCTTTCAAAGGACCGGAGAGCAAACTTGTTCATTAGGCAAAATTTACTGAGTGCCTACTCTGTGCCAGGCATTGGTGAATGCTGGGGTGCAACATTGAACCAGTCATGGCCCTGCCCTCAGCAAGCTCCAAACCCAGTCAGAGAGACGGCCAATAAAATAAGCAACTACTGTACTGAGGAACAGGGCTGTGGCAAACAAATGACACTCATTTTTGAATGAGTGAGTGAATTCAAGATTCAGTGAATGAATGAAGTGCAGTGTATTGTGCTATCCTGGTCTGGAGGATGAGAGAAGGCTTTCTAGAAGAGGTGATAGGACACCTGGAGGATGAATAAATTTAGCCATGTGAAGTGGGGAAGAGAGGAGTATTCTAGGCAGAGGAAATGGCATGTGCAAATGGCCTGGGGTTAGAACAAGATGGGATGGCAGAACCAAGAAAACTCGAATCTGAATCAGTCAGCTTAGGCTGTGGGGGCCAGGGTGGGATGGTGTGGAAGAGATGCTATTTGTGAAGTAGGCAGGACCGGGCTGTAAAAAACACTGTCATCCATGTCAAAGAGTTTAGATCCATTCAAAGAAATGGGATTTTTAAACATGCAGGAGAGGTTGGTATTTTCAGGCACCAAATTTAACCCAATGAGAACATTTCAATAGTGCCTTTATCCCTGTTTTCTGGTGATGATGGAAAAGCATAATGCCTTGTAGATTTCTCAGTTCTGACCACACAAGTTACATGTGGATAAGTCAGAGCCAGGTGGTGATACTCTGAAAGTATCCCTGTGAGCTCAGAGTGTTGGGTTGAGAAGATGAACAAGGCTAGATCCACTTCTATATCCACTAGCCCAGAGGGGCCTCACATTCAAGAAATCCTTGCCTACGGGGATCCATGGTGCACCAGGAAAAATGAAATTCGTAGTCAAGACTAGGAACAAGTACTTGGGAGAGAAAGGCCCAGCCTGGCAGCCTCCAGGTAGCAAACCACAAGATAATGAAAATTATTGTACTCACAGGCCCCTGTCCTTGAGTTCTTCCAGCCTAGCTCCCTCCAGGATGGGCTTGTTGGATTCACTTGTAATACACTGGCTACCAACCACTCACCATCTCTGGGGCAAAGATTCCATGATCCCATCTTTGTACCAAGCCCAAGCCAGAGATCGCAGATCTCAGGGTCTAGTTGCCTGGCATGATACATTCCTGACAGAGGTGGTGGAGATACATGTGTTACCATTGAACTCCAGAGTTGAGAAAGATGTGGCATCTAAAATGCAAAACAAGAAGACAAATAAATAGGAGGACTGAATGGGAACAGGGCCTTTACATTATTGTTTTAAAAGTCTCACTCTAGAAAACTCCACCAGAGCAACCTTATTTTGAGGTCCCTTCTCCCAAAGCAAAGCTATCCAGTGTGCCATGCAGGTAAAGTGGCAGCTGTGCTGGACAGAACTTGCTAAAGCTAGACTATCACCTTGCCTGTATGCAAAGCCTCCTGGGAGAATCTACAAAGGAATTCCTGCCTCCCCAGCCCCAGGAGCTGACATCCTGACCACAGGAGTTATGCTATTCTCACAGTTCCAATGTGTCTGTGTTTCACCCTCATGACCAATTGCTGAGAAGGCAGAAATAGTTCTTAAGAAATTCCAGAAGTAGAAGTCCCCCCTCCTTTAGGGCCAAGATGCACAAGATAAAGTTTGGGGAAAGAGTAGGCTTTTTATGGTGAAAGCTGCCCTAACATTTGTGGGGTCAGAGCAAAGGTATAGAAGAAGACCCACAAATTAGATGTCTAAATGTTTATAAATAAGTCAGCAAACTTAATATGTTCTCTTATCTTGGTCAACATACCTTCAAAATGATCTGAAAGTTAGTTATGAATTTAGACCCTTGGACCATTTCAGAGTGCCAGGATATGACATGGCAGTGGCGGGAGAATCTGGCCCTGGAACCATCCCTTTCTCTCTCTGCATCTGGCACATCCAACACCATGATGGGGCTTACACACATGCATATAGACCCCTCAGCCTGAACATCCAAGTTCTGTCCAAATAGCTACCCTTGGACCTAGAAGTGTGGACACTTGAAGCATGGTCTACCTGCAGGAGAATGGATCCATGGATGAGGTCTACAGAGACCTGGAAAGTGGCATAGGAGTCATTTAAACAGAGAATTTTGGGATCTCAGGTACCCAGAGAGTGGTTAAGGCGGGCAGCAGTCTTAAGGGGGTGCCTTCTTGGTCCCCCAGATTTCTCATCCCATAGGGATGGTTATCTCTGGAGAAGGCCCAGGGCAGGGGTCCCTCCCATCCGCAGCTAAGCATGGTACTGCTGGCAGAGGCCAGCATCAAACTTAACTGTGTCATCCCAGCCACAACAGGTCTGAATATTTAAAGAAACCCCTCGCCATCCTGCTTCTAAACGCGTGCCCGCCTTCCCAAGTGCTGGCTTTCCATCGCCTCCTTTACTCCTTCATTGGTCCTAGATCAGCCCTAGACAGGGTTCTCGGGGCCCCTCTTTATTCCCAGTCACCCCAAAGCCCAATTTCCAAGCCCCTTCCAAAGCCCTCTGTTGCAAGCGCATCCTCCCTCCCTCGTGCCCCCTCAATATTCACACCTAGGTAGTAGATGCAATACTCTAGCTGCCACTGGCATGTTCCACAAGGGTTTCCTGCTCCAACTTGGGCCCTAAGGGATTGATTAGGTTGGCTAGGTTAGGTCCCCTTTATGACAAAACCAAAACAGAATTGATGCCCCCACCCGTCAAGGGCACTTAAAAAACCAAAACTCAAAGTTCAGGGCCAAGTTTGAGGATGTGCAGAAAGGTGTGTGTTTTTTCTTGTCAATTGCGACTCTAATGATGGACTCACGTTGCCCGCTCTTCCCTTTCTCTTACACCTTACCTACCTACTAAAGGAGGAGTTCTTGCTTGGTAAGTGGATATAATCCGCAAAGACATGAGAGAATTTATTAGAAGCCACTCAAGAGCCTTAGCTACCTTCTACAAGGGGAAAAGGACACACACAAATATCTATAGTGACCCTTTTTTTCGTTTATTTTTGGTCAGACTGTTTAACTTCCATTTTTTTTGTCCCCTCCTTTCTTTTCCCCTTTAGTTGAAAACTGCTAAAATGTCAGTTTGCGACCTTGACTTTATATTTAAAAAAACAAAAAACAAACTCTCATCTTTATTTCATTTCTTTTCCCCATGTGATATTTGTTTAGGTTTCTATTCAGGCAACTTTTTCTTTTCAAAAAAAATTGTTAAATTAATTGAGGATTTGGTTGAAGTTTAAAATTTTGGCTTTATCTGCTTTTATTTTTAATTTCCAAGATATATTTTTTCAGGCCCATAGTTCCATTTCTTTTTCCCCTTTCCCTTCCTTTATTTTTTATTATTGTTTTAGGTTAAGGGTGTTTACACCCCCTTTCTATTGAGTTGACTCTTTTGTTTAATTCATTAGAAATTAAATTTTGTATAATTTCCTTTTTCTTTTGTTTAATCTGAATCGCATGCTTTTTCTCTGCATGATACCTAAATCTTCCAGTTATCCTAGCAGGGGGTAAAAAAAAAATCTCCTTTCTGTGGTATTCCTTCAGGAATTTGTGCTTTTGTTTTTTGGCGTCTCTTCTTTCTTCTCCTCTCTCTCTCTTTCCTTTCGTTACAGTGCATCATGACGGTAAACATTTCTTGGTTATTTAGAAACAGCCCATGGGCCCAGCGCTCAGCAGTGTCCAACGGGTCTTTTTGCTTTCAG
Seq C2 exon
ATCACTGGGTCGGGGTCTGCTGCTGACCTCTTTACCAAAACAGCCAGCCCGCTCACCACCTCGCGAGGACGTTCCCAGGAGTACGACTCAGGAAATGACACGTCCTCGCCACCCTCCACGCAAACCAGCTCAGCCAGGTCTCGGGGCCAGGAGAAGGGGAGCCCCAGTGGGGGCTTGAGCAAGAGCCGGGAGCTCAACAGTGGCAACACCTCTGATTCAGGGAACTCCTTCACCACCTCCTCACCCCAGAACAAGGGGGCCATGTTGGAGAATCTCTCCCCCACCAGCAGGGGCAGAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139767-SRRM4:NM_194286:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 27984743
Likely leads to nuclear retention and reduction of SRRM4 protein levels upon prolonged neuronal activity.
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)