BtaEX0034638 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34931163-34932624:-
Coord C1 exon
chr25:34932550-34932624
Coord A exon
chr25:34932123-34932434
Coord C2 exon
chr25:34931163-34931231
Length
312 bp
Sequences
Splice sites
3' ss Seq
CGGGCCTGTGCACCCTGCAGGCG
3' ss Score
6.65
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTACAGGAGTTGGTGCCCTGCCTTCCAGGGAGCCCGCACGGCTCACCACTGCCGCCTGGGCGGCAGGGAAGAAAA
Seq A exon
GCGGGCGGCTGCGGCTGGTAGGTGGCCCAGGCCCGTGCCGCGGTCGCGTAGAGGTGCTGTACGCCGGGGGCTGGGGCACCGTGTGCGATGACGACTGGGACTTCGCGGACGCGCGCGTGGCCTGCCGCGAGGCGGGCTGCGGGCCGGCGCTGGGCGCCACGGGCCTTGGCCACTTCGGCTACGGCCGCGGCCCCGTGCTGCTGGACAACGTGGGTTGCGCCGGCACGGAGGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAGCACAACTGCGGGCACCACGAGGATGCGGGCGCGATCTGCTCAG
Seq C2 exon
GTCCAGATGAGCTAGTCCAGCAGGACGGTGCTGAGACCACCCGGGTACCCACTCCTCGGCCCAGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development