RnoEX0086272 @ rn6
Exon Skipping
Gene
ENSRNOG00000001435 | Ssc4d
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23760176-23761779:+
Coord C1 exon
chr12:23760176-23760250
Coord A exon
chr12:23760365-23760831
Coord C2 exon
chr12:23761702-23761779
Length
467 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTGTGCGCCCCGCAGGCG
3' ss Score
9.24
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
CTACAGGAGTTGGTGCCCTGCCTTCCAGGGATACCATACGGTTCACCACGGCAGCCTGGGCCTCAGGGAAGAAAA
Seq A exon
GCGGTAGGCTGAGGCTAGTAGGCGGCCCCAGCCCTTGTCGCGGTCGCGTGGAGGTGCTGTACGCCGGAGGTTGGGGCACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGTCGCGAGGCGGGTTGTGGGCCTGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTGGACAACGTAGGCTGCACCGGTACCGAAGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAGCACAATTGCGGCCACCACGAAGACGCTGGAGCTTTGTGCGCAGGTGAAGCTGTGGAGTCGGATAAGGAGTGGGCGGGGCCCGACGAATAGGAAATATGGGCGGGGCACTCTGAAAGAAAAGCAGAGCAGCGCAAGCAGAGCAAGCAGGGCTGAGGGCCCATAAGAGAGGCAGTGTACATGCGCGTACCAACAATATGG
Seq C2 exon
GCCCAGAGGAGCTGGGACTCCAGGTCCAGCAGGATGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]