MmuEX0044862 @ mm10
Exon Skipping
Gene
ENSMUSG00000029699 | Ssc4d
Description
scavenger receptor cysteine rich family, 4 domains [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:135961889-135963430:-
Coord C1 exon
chr5:135963356-135963430
Coord A exon
chr5:135962923-135963234
Coord C2 exon
chr5:135961889-135961966
Length
312 bp
Sequences
Splice sites
3' ss Seq
CCGGCCTGTGCGCCCCGCAGGCG
3' ss Score
8.97
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CTACAGGAGTTGGTGCCTCACCTTCCAGGGACACTGTGTGGCTGACGACAGCAGCCCGGGCCTCAGGGAAGAAAA
Seq A exon
GCGGAAGGCTGAGGCTGGTCGGGGGCCCGAGCCCGTGCCGCGGCCGCGTGGAGGTGCTGTACGCCGGGGGTTGGGGCACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGGGTGGCCTGTCGCGAGGCGGGTTGCGGGCCCGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTAGACAACGTAGGCTGCACCGGTACTGAGGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGACAGCACAACTGCGGCCACCACGAAGACGCCGGAGCGCTTTGTGCAG
Seq C2 exon
GCCCAGAGGAACTGGGACTCCAAGTCCAGCAGGCTGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.309 A=0.019 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=93.3)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types