MmuEX0044860 @ mm10
Exon Skipping
Gene
ENSMUSG00000029699 | Ssc4d
Description
scavenger receptor cysteine rich family, 4 domains [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:135960211-135962327:-
Coord C1 exon
chr5:135962200-135962327
Coord A exon
chr5:135961889-135961966
Coord C2 exon
chr5:135960211-135961208
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTATGCCCCTGCTGAGCCAGGCC
3' ss Score
0.4
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TCAAGGGAGCACTCGTGCTGTGCTATCCAATTTATAGTCTCTGCTGCTAGTGATTGGTAGGAAGCAGGAGTGGCTGACGGCTTTCCCAAAACTAGCCTTTGACTTTTCAGAGATACCAATGAAAACAG
Seq A exon
GCCCAGAGGAACTGGGACTCCAAGTCCAGCAGGCTGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATG
Seq C2 exon
GGCACCTCCGTCTGGCTAGTGGAACACACCGATGTGAGGGGCGCGTAGAACTCTTCCTAGGACAACGGTGGGGCACTGTTTGTGATGATGCCTGGGACCTACGGGCAGCCATTGTCCTGTGCCGTCAGCTGGGATGTGGCCAGGCTCTCGCAGCCCCGGGAGAGGCCCACTTTGGCCCAGGCCGAGGCCCAATCCTCTTGGACAATGTCAAATGCCGAGGAGATGAGAGCACCTTGCTACTGTGCTCTCATATCCGCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCTTGTGCCAGCCATTGTGACCCAGATGGCTCTGTACTCCATACCATATCAAAGGAGCCTATGAGGAACTGCCTGTCCTTTCCCAGGATGCCTTCCTATGATAGCTCGGGTTCCTGGTACCCCTTTCTCCCCGTGCATGGGAGAGATGCAGTACCTGCCCGAGTCCTCTTACTGTGTGTCCCGAGACTGTTATCACCTGCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699-'15-18,'15-17,16-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.750 A=0.750 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAGCAGGAGTGGCTGAC
R:
TAGGTCCCAGGCATCATCACA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types