BtaEX6110380 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34930217-34932434:-
Coord C1 exon
chr25:34932123-34932434
Coord A exon
chr25:34931163-34931231
Coord C2 exon
chr25:34930217-34930533
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTTGCTGAACCAGGTC
3' ss Score
8.52
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GCGGGCGGCTGCGGCTGGTAGGTGGCCCAGGCCCGTGCCGCGGTCGCGTAGAGGTGCTGTACGCCGGGGGCTGGGGCACCGTGTGCGATGACGACTGGGACTTCGCGGACGCGCGCGTGGCCTGCCGCGAGGCGGGCTGCGGGCCGGCGCTGGGCGCCACGGGCCTTGGCCACTTCGGCTACGGCCGCGGCCCCGTGCTGCTGGACAACGTGGGTTGCGCCGGCACGGAGGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAGCACAACTGCGGGCACCACGAGGATGCGGGCGCGATCTGCTCAG
Seq A exon
GTCCAGATGAGCTAGTCCAGCAGGACGGTGCTGAGACCACCCGGGTACCCACTCCTCGGCCCAGGGACG
Seq C2 exon
GACACCTACGTCTGGCCAACGGAGCCCACCGATGTGAGGGGCGTGTGGAGCTCTTCCTAGGGCAGCGGTGGGGCACTGTCTGTGACGATGCTTGGGACCTGCGGGCAGCTGGCGTCTTGTGTCGCCAGCTGGGCTGTGGCCAGGCCCTGGAAGCCCCTGGTGAGGCCCACTTTGGCCCAGGCCGAGGCCCTATTCTCCTGGACAATGTCAAGTGCCGTGGGGATGAGAGCGCCCTGCTGCTGTGCTCTCACATCCGCTGGGATGCCCACAACTGTGACCACAGCGAGGATGCCAGTGTCCTGTGCCAGCCGGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020-'8-11,'8-10,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTTCCATCTGGGCTG
R:
GTCCCAAGCATCGTCACAGAC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]