HsaEX7104728 @ hg38
Exon Skipping
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76389334-76393716:-
Coord C1 exon
chr7:76393405-76393716
Coord A exon
chr7:76391964-76392041
Coord C2 exon
chr7:76389334-76390375
Length
78 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCCTTCCTGAACCAGGCC
3' ss Score
8.94
5' ss Seq
ACGGTAGGT
5' ss Score
10.15
Exon sequences
Seq C1 exon
GTGGACGGCTGCGACTGGTGGGCGGCCCGGGTCCGTGCCGCGGCCGCGTGGAGGTGTTGCACGCCGGGGGCTGGGGCACCGTGTGCGACGATGACTGGGACTTTGCGGACGCGCGCGTGGCCTGCCGCGAAGCGGGCTGCGGGCCTGCGCTGGGCGCTACGGGACTGGGCCACTTCGGCTACGGCCGCGGCCCCGTGCTGCTGGACAACGTGGGCTGCGCCGGCACCGAGGCTCGCCTGAGCGACTGCTTCCACCTGGGCTGGGGCCAGCACAACTGCGGCCACCACGAGGACGCGGGAGCGCTCTGCGCAG
Seq A exon
GCCCAGAGGAGCTGGGACTGCAAGTCCAGCAGGATGGTTCTGAGACCACGCGGGTGCCCACTCCTCGGCCCAGGGACG
Seq C2 exon
GGCATCTACGTCTGGTCAATGGAGCCCACCGATGCGAGGGACGTGTAGAGCTCTACCTAGGGCAACGGTGGGGCACTGTCTGTGATGATGCTTGGGACCTGCGGGCAGCCGGTGTCCTGTGCCGCCAGCTGGGCTGTGGCCAGGCCCTCGCAGCCCCTGGCGAGGCTCACTTTGGCCCAGGCCGAGGCCCCATTCTCCTGGACAATGTCAAGTGCCGTGGGGAAGAAAGTGCTCTGCTGCTCTGCTCTCATATCCGCTGGGATGCCCACAACTGTGACCACAGCGAGGATGCCAGTGTCCTGTGCCAGCCTTCATGACCCAGCCCGCTCTGCAGACCACCTCTTCTTCTGGGAGCTGTGACCTCCCTTCCTCCTCCAGGAAGCCCTCCTCTTGTGATGACTACAGTTCACTTTGCCCCTCCTTCCCTTGCCTGGGAGAGAGCCTACCTAGACAGTGCAGTCCTGCTTGGGGGAGCCTGGCTGTACCCCCGTCCACTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700-'15-20,'15-17,21-20=AN
Average complexity
A_C1
Mappability confidence:
67%=89=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.010
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGGACTGGGCCACTTC
R:
GGCTCCATTGACCAGACGTAG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains