MmuEX0044860 @ mm9
Exon Skipping
Gene
ENSMUSG00000029699 | Srcrb4d
Description
scavenger receptor cysteine rich domain containing, group B (4 domains) [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:136436081-136438197:-
Coord C1 exon
chr5:136438070-136438197
Coord A exon
chr5:136437759-136437836
Coord C2 exon
chr5:136436081-136437078
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTATGCCCCTGCTGAGCCAGGCC
3' ss Score
0.4
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
TCAAGGGAGCACTCGTGCTGTGCTATCCAATTTATAGTCTCTGCTGCTAGTGATTGGTAGGAAGCAGGAGTGGCTGACGGCTTTCCCAAAACTAGCCTTTGACTTTTCAGAGATACCAATGAAAACAG
Seq A exon
GCCCAGAGGAACTGGGACTCCAAGTCCAGCAGGCTGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATG
Seq C2 exon
GGCACCTCCGTCTGGCTAGTGGAACACACCGATGTGAGGGGCGCGTAGAACTCTTCCTAGGACAACGGTGGGGCACTGTTTGTGATGATGCCTGGGACCTACGGGCAGCCATTGTCCTGTGCCGTCAGCTGGGATGTGGCCAGGCTCTCGCAGCCCCGGGAGAGGCCCACTTTGGCCCAGGCCGAGGCCCAATCCTCTTGGACAATGTCAAATGCCGAGGAGATGAGAGCACCTTGCTACTGTGCTCTCATATCCGCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCTTGTGCCAGCCATTGTGACCCAGATGGCTCTGTACTCCATACCATATCAAAGGAGCCTATGAGGAACTGCCTGTCCTTTCCCAGGATGCCTTCCTATGATAGCTCGGGTTCCTGGTACCCCTTTCTCCCCGTGCATGGGAGAGATGCAGTACCTGCCCGAGTCCTCTTACTGTGTGTCCCGAGACTGTTATCACCTGCGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699-'12-17,'12-16,13-17
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.750 A=0.778 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAGCAGGAGTGGCTGAC
R:
TAGGTCCCAGGCATCATCACA
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types