RnoEX0086270 @ rn6
Exon Skipping
Gene
ENSRNOG00000001435 | Ssc4d
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23760365-23762877:+
Coord C1 exon
chr12:23760365-23760676
Coord A exon
chr12:23761702-23761779
Coord C2 exon
chr12:23762561-23762877
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTGCCCCTACTGAGCCAGGCC
3' ss Score
0.58
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
GCGGTAGGCTGAGGCTAGTAGGCGGCCCCAGCCCTTGTCGCGGTCGCGTGGAGGTGCTGTACGCCGGAGGTTGGGGCACCGTGTGCGACGATGACTGGGACTTCGCGGACGCGCGCGTGGCCTGTCGCGAGGCGGGTTGTGGGCCTGCGCTAGGCGCCACGGGCCTTGGTCATTTTGGCTATGGCCGAGGCCCTGTGCTGCTGGACAACGTAGGCTGCACCGGTACCGAAGCCCGCCTCAGCGACTGCTTCCATCTGGGCTGGGGCCAGCACAATTGCGGCCACCACGAAGACGCTGGAGCTTTGTGCGCAG
Seq A exon
GCCCAGAGGAGCTGGGACTCCAGGTCCAGCAGGATGGTTCTGAGACCACCCGAATGCCCAGTCCTCGGCCCAGAGATG
Seq C2 exon
GGCACCTCCGTCTGGCTAGTGGAACCCACCGATGTGAAGGGCGTGTAGAACTCTTCCTGGGACAGCAGTGGGGCACTGTTTGTGATGACGCCTGGGACCTACGGGCAGCCATTGTCCTGTGCCGTCAGCTGGGATGTGGCCAGGCTCTGGCAGCCCTAGGCGAGGCCCACTTTGGCCCAGGCCGAGGCCCAATCCTCTTGGACAATGTCAAATGCCGAGGAGACGAGAGCACCTTGCTACTTTGCTCTCACATCCGCTGGGATGTCCACAACTGTGACCACAGCGAGGATGCCAGTGTCCTCTGCCAGCCATTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435-'9-10,'9-9,19-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.667 C2=0.019
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTGCTGGACAACGTAG
R:
AGGAAGAGTTCTACACGCCCT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]