BtaEX0034738 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67726818-67731124:+
Coord C1 exon
chr5:67726818-67726894
Coord A exon
chr5:67730340-67730465
Coord C2 exon
chr5:67731051-67731124
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCATCTTTCTCTTCTATAGCAA
3' ss Score
9.19
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
Exon sequences
Seq C1 exon
CTGTCTTCTCAATCTGGATGGCACAGCCTTGTGCAAATGTGCAGCAGGGTTCCAGGGGAATGGGACCATCTGCACAG
Seq A exon
CAATCAATGCCTGTGAGATCAGCAATGGAGGTTGCTCTGCCAAGGCTGTCTGTAAAAGAACCACCCCAGGAAGCCGGGTGTGTGTGTGCAAGGCAGGCTATACTGGCGATGGCATCGTGTGCATAG
Seq C2 exon
AGATCAACCCCTGCTTGGAGAACCATGGTGGCTGCCACAGGCATGCAGAGTGCACACAGACGGGACCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010-'44-49,'44-47,45-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(66.7=88.9)
A:
PF129472=EGF_3=WD(100=86.0)
C2:
PF129472=EGF_3=PU(54.1=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCTCAATCTGGATGGCAC
R:
GTTGGGTCCCGTCTGTGTG
Band lengths:
147-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development