RnoEX6031000 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27412498-27416459:-
Coord C1 exon
chr7:27416383-27416459
Coord A exon
chr7:27414095-27414220
Coord C2 exon
chr7:27412498-27412571
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTCTCCCCTGTGTAGCCA
3' ss Score
8.9
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
CTGCCTTCTGGATCCAGACGGCAAAGCCTCGTGCAAATGTGCGGCAGGATTCCGAGGGAATGGAACGGTCTGCACAG
Seq A exon
CCATCAATGCCTGTGAGACCAGCAATGGAGGATGTTCTACAAAGGCCGACTGTAAAAGAACCACCCCAGGAAACCGGGTGTGTGTGTGCAAGGCAGGCTATACCGGCGACGGCATCGTGTGCCTTG
Seq C2 exon
AAATCAACCCGTGTTTGGAGAACCATGGCGGCTGTGACAGGAATGCAGAGTGCACGCAGACAGGGCCCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'48-50,'48-49,50-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(66.7=88.9)
A:
PF129472=EGF_3=WD(100=86.0)
C2:
PF129472=EGF_3=PU(54.1=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATCCAGACGGCAAAGC
R:
CTGGTTGGGCCCTGTCTG
Band lengths:
144-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]