DreEX6001335 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10749900-10750434:+
Coord C1 exon
chr4:10749900-10749979
Coord A exon
chr4:10750061-10750186
Coord C2 exon
chr4:10750358-10750434
Length
126 bp
Sequences
Splice sites
3' ss Seq
GCTGTTATCATCCACTAAAGCTA
3' ss Score
2.59
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CTGCTTGGTGAATGTGGTGGACAGCTCATATTACTGTAGTTGTGCTGCAGGATTTCAGGGAAACGGCACATATTGTGAAG
Seq A exon
CTATAGATGCATGTGCAGAGAGGAATGGAGGTTGCTCAGCCCATGCGGTGTGCAAGCGCACTCTTCCCGGAAGGAGAATATGCATGTGCCATCCAGGTTATGCAGGCGATGGAAATGTTTGCACTT
Seq C2 exon
CCATCAATCCATGCCTGGATGGTGTAAATGGAGGATGCCATGCGGATAGTAACTGCATTCATACAGGCCCTAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'46-49,'46-48,47-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126622=cEGF=PU(85.7=64.3)
A:
PF126622=cEGF=PD(9.5=4.7),PF129472=EGF_3=WD(100=86.0)
C2:
PF129472=EGF_3=PU(55.3=80.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTGGTGAATGTGGTGGA
R:
ATTAGGGCCTGTATGAATGCAGT
Band lengths:
154-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]