BtaEX0035696 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118286688-118290999:+
Coord C1 exon
chr6:118286688-118286768
Coord A exon
chr6:118287855-118287949
Coord C2 exon
chr6:118290890-118290999
Length
95 bp
Sequences
Splice sites
3' ss Seq
GACTCCTGGTCTTTTGACAGATG
3' ss Score
7.84
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
Seq A exon
ATGCTGGTTTTTCAGCAGCAGACAGAGAAGCCAGTCTGGAGCTGATTAAACTGGACATCTCCAGAACATTCCCCAGTCTCTGCATTTTCCAGCAA
Seq C2 exon
ATGTTGACGTACTTTGCTGCATTTGAGGTATTCTTTGAAGAAAATTTGCCGAAATTATTTGCTCATTTCAAGAAAAACAACTTAACTCCAGACATCTACCTAATTGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493_MULTIEX2-3/7=2-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(13.6=100)
C2:
PF0056613=RabGAP-TBC=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCGACATCTGTCTCGC
R:
AGGTAGATGTCTGGAGTTAAGTTGT
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development