GgaEX1057314 @ galGal3
Exon Skipping
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82880307-82882861:+
Coord C1 exon
chr4:82880307-82880387
Coord A exon
chr4:82881628-82881722
Coord C2 exon
chr4:82882790-82882861
Length
95 bp
Sequences
Splice sites
3' ss Seq
AGTAACTTTGGCTTTTGTAGATG
3' ss Score
6.27
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
AGCTATACGATATTTGTCTGGCTCGTGCCAAAGAAAAATGGCGATCACGTAGCACGGTAGGAGCTGAGGTAGAATGTGAAG
Seq A exon
ATGCTGGATTTTCTACAGCTGACAGAGAAGCAAGTTTGGAGTTAATAAAACTGGATATCTCAAGAACGTTTCCTAATCTCTGTATATTCCAACAA
Seq C2 exon
GGCGGTCCTTACCATGACACATTGCACAGTATTTTAGGAGCCTATACTTGTTACAGACCTGATGTAGGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-'22-22,'22-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
PF0056613=RabGAP-TBC=FE(13.6=100)
C2:
PF0056613=RabGAP-TBC=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTATACGATATTTGTCTGGCTCG
R:
ATCCTACATCAGGTCTGTAACAAGT
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]