DreEX0077409 @ danRer10
Exon Skipping
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39424449-39427578:+
Coord C1 exon
chr7:39424449-39424535
Coord A exon
chr7:39424716-39424810
Coord C2 exon
chr7:39427450-39427578
Length
95 bp
Sequences
Splice sites
3' ss Seq
AACTACTGCTCATTTTTTAGATG
3' ss Score
7.55
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
Seq A exon
ATGCAGGCTTGTCTCATGCTGATCGAGAGGCCAGTCTAGAACTAATCAAGTTAGACATTTCCAGAACATTTCCCAATCTCTGTATATTCCAAAAG
Seq C2 exon
GTGCAGGGAATGTCCTTTATAGCAGCTGTGTTGATCCTCAACCTGGACACTGCTGATGCCTTCATTGCATTTGCTAATTTGTTGAACAAGCCTTGTCAAATGGCTTTCTATAGAGTGGACCACAGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
A:
PF085986=Sds3=PD(6.3=37.5),PF0056613=RabGAP-TBC=FE(13.5=100)
C2:
PF0056613=RabGAP-TBC=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGAGCGAAGGAGAAG
R:
GCCATTTGACAAGGCTTGTTCA
Band lengths:
174-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]