BtaEX0037061 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011023 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr5:100227977-100233223:-
Coord C1 exon
chr5:100232714-100233223
Coord A exon
chr5:100230410-100230453
Coord C2 exon
chr5:100227977-100228015
Length
44 bp
Sequences
Splice sites
3' ss Seq
GATTATTTCCCTTCCTACAGCTT
3' ss Score
9.53
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TGATGGAAAAGAGACTTTATTTGGTCTCCCTTTGATCCCCCTTCAAGTCCAGTTTCTTACCACTGCCTAGAAAAATACCTAATTCACAGGACTTACGTGTCCTTCCTGAGAGTTGTCCTTTTGGAGGCAGTGTGGACAAGGCATCTAGAAAGGACTAAAAGTAGAATGGAAGAAAAGGAGGGGCAGGGAAGCAAATGTAGAGACCTTGAGCCCAGGGGCAGAAGTAGAGAAAGAAGCTAGGATGAAAGGGGAGAGAAAAATTACAGAAAACAACAACTACAGAGAGTGAGAGGAGAGAAAGAGACAGAGGAGGAAAAACCAGAGTATTGCTGAGAGAAGTTTCTGTCCTTAAGTCCTCTAGGTCAAGAAGTCAGACATGGCCCAGAGCACAGAAGGGAGACGACGGATGCCCAGTGCCTGATCTGGAGAAGTAAGAGTCCAGCCAGATGGGACTGCAGTCCCCAGCTCTGATGGCCTCCGCCCTGGTGTATTTCACCCAG
Seq A exon
CTTCCTCGGGCAAGATGTGAGGAGAACTGTGTCAGTCCTGAACA
Seq C2 exon
CTGCCTGACCACAGACTGGGTACATCTCTGGTATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011023_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF116693=WBP-1=PU(10.7=73.3),PF149791=TMEM52=PU(5.6=53.3)
C2:
PF116693=WBP-1=FE(12.6=100),PF149791=TMEM52=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCACAGAAGGGAGACGA
R:
TGTACCCAGTCTGTGGTCAGG
Band lengths:
142-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development