HsaEX0009259 @ hg38
Exon Skipping
Gene
ENSG00000165685 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr12:10179013-10185368:+
Coord C1 exon
chr12:10179013-10179628
Coord A exon
chr12:10182550-10182593
Coord C2 exon
chr12:10185330-10185368
Length
44 bp
Sequences
Splice sites
3' ss Seq
GACAATTTCTCTTTCTACAGCTT
3' ss Score
8.82
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATTTGGTCACCAGCAATCTGCCTTTGACCATCCTCAAAGCCAAGTTTTTCATCGCTGTCTAGAAAAATACTTCATTCAGAGGACACATATGTCCTCTTTGAATGTCTCCTTTTTGGGAGCAGTAGGAGAAAGAAACTTCAAGATGTAGAAAGAATTAATAGTGTAACGGAAAGAAAGAAGGCAAAAGGAAGTAAATGTGGAGGCCATAGAAATAGTAATAAGAATAAAGAAGAAAAACAGGAAAGAAGAGGGAAAAGCCATAGAAAATAACAGCCAGAGCGAGTAGGAGGAGACAGAGAGAACGAGAGAGAGAAAAGCTGATAAATTCCTGAGAAAAGTTTCTCTTCTTAAGAATTCTAGGTCAAGAAGTAAAATATGGCACAGAGCATTGAAAGGAGGCAACGGATGCCCAGTGCAAGATTCTGAAGAAGCAGGAATTCAGCCCGATGGGAGTCCGAGTTCATGTCGTGGCGGCCTCAGCCCTGCTGTATTTCATCCTG
Seq A exon
CTTTCTGGGACGAGATGTGAGGAAAACTGTGGTAATCCTGAACA
Seq C2 exon
TTGCCTGACCACAGACTGGGTACATCTCTGGTATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165685_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149791=TMEM52=PU(4.9=53.8)
A:
PF149791=TMEM52=PU(12.1=53.3)
C2:
PF149791=TMEM52=FE(19.7=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTGAAAGGAGGCAACGGA
R:
TGTACCCAGTCTGTGGTCAGG
Band lengths:
139-183
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development