GgaEX1059269 @ galGal4
Exon Skipping
Gene
ENSGALG00000027302 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr1:77904794-77908186:-
Coord C1 exon
chr1:77907717-77908186
Coord A exon
chr1:77907118-77907161
Coord C2 exon
chr1:77904794-77904963
Length
44 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTTTCTCCTTCCAGTTC
3' ss Score
11.6
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GAAGGGCAGGGTCAGGTCTGCAGAGATCTCTTGATGCCCTTTACTGAGCTAGTTCAACATCTAAAGAACAAACTCGTAGCCACCACTTTTCTCCTGATCTGACTGGAAGGTTTTAGAGATCCCTTCAAAAGAGGGAACGAAACATACCAAGAAAATAAGCAAAGGAGACAGGCAGAAACAAACAGGAGCTGTCAGTGACAAAGAGCAAAAAGAGGGAAGCTAAAACTTCAAGGGCAGAGACCAGGGACAGATCCAGAGACAGACTGAAAGAACTAGAGTGGGAAGAAGAGATGGGATTCAACACACAAGAAGGAATCTGCTCCTTCTAATCAGTGGACTGGAGAGGATGAACAGAAGCTAGGAAGGAGAAAAGATACCGAGTAGCTTGAGACAGCAAAAGGCCACAGATCCACCCCATGGGGATGCATAACTCAGTCATTATCTGCTTTGTTTTAGGATGTTTCTTATGG
Seq A exon
TTCCCCAAAGTAAGAAGTGAGGAAGGGTGTCTCAATGCTGAATT
Seq C2 exon
GCTGGTGGTTGTGATTGGTGGACTGCTGCTGCTGTGCGGCTTGGTTTCTGTCTGCGTGAGATGTTGTCTCACTCACTGCCGTCAGGCTGGGGAGGAATCAGGTCTTCAACCCTATGAGGTCACTGTCATTGCTTTTGATCATGACAACACCCTCCAGAGCACCATTACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027302_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149791=TMEM52=PU(5.5=53.3)
C2:
PF149791=TMEM52=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAGCAAAAGGCCACAG
R:
TCACGCAGACAGAAACCAAGC
Band lengths:
143-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]