MmuEX0013614 @ mm9
Exon Skipping
Gene
ENSMUSG00000030160 | D630042F21Rik
Description
RIKEN cDNA D630042F21 gene [Source:MGI Symbol;Acc:MGI:2442838]
Coordinates
chr6:129462575-129466100:+
Coord C1 exon
chr6:129462575-129463122
Coord A exon
chr6:129464232-129464275
Coord C2 exon
chr6:129466062-129466100
Length
44 bp
Sequences
Splice sites
3' ss Seq
AGATTATTTCCTTCCCACAGCTT
3' ss Score
8.74
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTCATCCAGGAGCCGAGAGTGTGTAACTAGTTTCCTGATGAACACAAGAACACATCTGGTCACTCACAATCTGCCTTTGACCTATTACAGGTCCAAGTCTCTCATTATAGACTGAGGAAAAAAAAATCTAACTCAGAGGACAAATGTGCTCTTCTTGAATGCAGACGAAGAAAAATTAAATACACAGAAAAGTTTGATTGAAGAAAGGAAGTGGAGAGGAAGCCAATGTGGAGACCCCGTGAAGAGAACTCAGGAGGAGGAAACTAAAAGGGAAAAGGAAACCGTAAAATATAAAGCCAGCGGGAACAAGGAGAGGAGATTGATCTATTGCCGAGAAAAAATTCTCTTTAGGAATCCTTCACCACCAAGTTCCACGTGGCACGGAGCATGGGAAGGATACAGCAGATGCAGCCGGCGTGACCTTTCTGGACCAGATGTTCAGCCTAATGACAGCCTGGGCCCAGGTGCTGATGGCCTCTGGCCTGTTTTATTTCATCCAG
Seq A exon
CTTCCTGGGGCCAGGAGTGAGGAGAACTGTGTCAACACTGAACA
Seq C2 exon
TTGCCTGACTACTGACTGGGTGCATCTCTGGTATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030160_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149791=TMEM52=PU(5.6=53.3)
C2:
PF149791=TMEM52=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAGCATGGGAAGGATACA
R:
ACCCAGTCAGTAGTCAGGCAA
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: