BtaEX0037166 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29016272-29019303:-
Coord C1 exon
chr15:29019199-29019303
Coord A exon
chr15:29016501-29016539
Coord C2 exon
chr15:29016272-29016394
Length
39 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTTCTCTCCATACAGATG
3' ss Score
10.02
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTATCACCTTGCCCAAGTTCACCTGGCAGGAGGGCCAGAAGCGGCTGCTGCTCATCGGATGTGTCCTCCTTCTCATCGCCCTCGTGGTGTCGCTCATCATCCTAT
Seq A exon
ATGGGGGACGAGAACCCCAGAGCCCAAGAGGGATTGCAG
Seq C2 exon
TTTACTTTTGGCGGGGCCACACAGGGGTCAATTACAAAGAGCCAAGAGAGAGCTGTCCTAGTCACGCTGTGCGCTGTGATGGAGTTGAGGACTGTAAGCTGAAGAGTGATGAGCTGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=69.0)
Main Inclusion Isoform:
ENSBTAT00000010989fB7271
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTGGTGTCGCTCATCATC
R:
GTCCTCAACTCCATCACAGCG
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development