HsaEX0066067 @ hg19
Exon Skipping
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:29808]
Coordinates
chr11:117785107-117787989:-
Coord C1 exon
chr11:117787885-117787989
Coord A exon
chr11:117785324-117785362
Coord C2 exon
chr11:117785107-117785229
Length
39 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTTCTCTCCATACAGATG
3' ss Score
10.02
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTACGAGCCTGCCCAAGTTCACCTGGCGGGAGGGCCAGAAGCAGCTACCGCTCATCGGGTGCGTGCTCCTCCTCATTGCCCTGGTGGTTTCGCTCATCATCCTCT
Seq A exon
ATGGGGGATGAGAGCCCCAGAGTTCAAGAGGGATTGCAG
Seq C2 exon
TCCAGTTCTGGCAGGGCCACACAGGGATCAGGTACAAGGAGCAGAGGGAGAGCTGTCCCAAGCACGCTGTTCGCTGTGACGGGGTGGTGGACTGCAAGCTGAAGAGTGACGAGCTGGGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747-'3-5,'3-4,4-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005713=Ldl_recept_a=WD(100=69.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCAGCTACCGCTCATC
R:
GCTCTCCCTCTGCTCCTTGTA
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)