MmuEX1026347 @ mm10
Exon Skipping
Gene
ENSMUSG00000037129 | Tmprss13
Description
transmembrane protease, serine 13 [Source:MGI Symbol;Acc:MGI:2682935]
Coordinates
chr9:45329865-45332589:+
Coord C1 exon
chr9:45329865-45329969
Coord A exon
chr9:45332322-45332360
Coord C2 exon
chr9:45332467-45332589
Length
39 bp
Sequences
Splice sites
3' ss Seq
CAGCCTTTCTTTCCATACAGATG
3' ss Score
9.82
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTCTCAGTTTCCCCAAGTTCTCCTGGCAGGAGACCCAGAGGCAGCTGCCACTCATCGGGTGTGTCATCCTTCTCATCAGCCTGGTGATCTCACTCATCCTTCTCT
Seq A exon
ATGGGGGACGGGAGACCCAGAGTCCAAGAGGGACTGCAG
Seq C2 exon
TCTACTTCTGGAGAGGCCACACAGGGATCAAGTACAAAGAGCCACTGGAGAGTTGCCCTATCCACGCAGTTCGCTGTGATGGAGTGGTGGACTGCAAAATGAAGAGCGATGAGCTGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037129_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000034597fB18455
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCATCGGGTGTGTCATCCT
R:
GCAACTCTCCAGTGGCTCTTT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types