BtaEX0037215 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105995444-106005704:-
Coord C1 exon
chr8:106005432-106005704
Coord A exon
chr8:106003885-106004157
Coord C2 exon
chr8:105995444-105995716
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTCTCACTTTAGTAG
3' ss Score
7.52
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCAGAGAACCTGAACTTGGAAACTTAAGTGTTTCCGACATCACTTCTGAGAGTTTCAATCTCTCCTGGACCGCTACTGATGGTGCCTTCGAGACCTTTACCGTTGAAATTATTGATTCCAATAGGTTCCTGGAGACCATGGAATATAACGTCTCTGGTGCTGAACGAACAGCCCACATCTCAGGGCTCCGCCCTAGTAATGACTTTATTGTCTACCTCTCTGGACTCGCTCCCAGCATGCAGACCAAAACCATCAGTGCCACGGCCAGCACAG
Seq A exon
TAGCTGAGCCTCTCCTTAGCCACCTCACTGTCTCAAATGTGACTTCGGGCAGTGTGGCCATCTCATGGAAAGCTCAGGAGTCTGCCTTTGATAGCTTCCTTGTAGAAGTTAGGAATTCTGACCCCCTCCAGGAGACGGTGGTCCATTCTCTGCCTGCGGCGTCTCGCAGCTTTGTCATCACCAACCTCAAAGCTTCTTCTGATTACACTGCCCACCTCCACGGGCTGATTGGCAGGCAGCATGCTCAGACCCTGATGGTCCAAGCAACCACAG
Seq C2 exon
AAGCCGAGCCGGAAGTTGACAACCTTCTGGTTTCAGATGCCACCCCAGATGGGTTCCGTCTGTCCTGGACAGCTGATGAAGGAGTCTTCGACAGTTTTGTTCTCAAAATCAGAGATACCAAAAAGCAGTCCGAGCCACTGGAGATAACCCTCCTTGCCCCCGAACGAACCAGGGACATTACAGGTCTCAGAGAGGCCACTGAATATGAAATTGAGCTCTATGGAATAAGCAGTGGAAGGCGATCCCAGCCAGTCACTGCCATAGCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575_MULTIEX1-7/10=6-10
Average complexity
C3
Mappability confidence:
78%=78=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=79.3)
A:
PF0004116=fn3=WD(100=84.8)
C2:
PF0004116=fn3=WD(100=88.0)
Main Inclusion Isoform:
ENSBTAT00000000752fB7278
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCTCTGGACTCGCTCC
R:
CGCCTTCCACTGCTTATTCCA
Band lengths:
303-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development