GgaEX1059504 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2653984-2674301:-
Coord C1 exon
chr17:2674038-2674301
Coord A exon
chr17:2660653-2660925
Coord C2 exon
chr17:2653984-2654256
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATTTGTTTTTCTTCCCATAGTAG
3' ss Score
7.74
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ATCTTGATAACCCCAAGGACTTGGAAGTCAGTGACCCCACTGAAACCACCCTGTCCCTTCGCTGGAGAAGACCAGTGGCCAAATTTGATCGTTACCGCCTCACTTACGTTAGCCCCTCTGGAAAGAAGAACGAAGTGGAGATCCCTGTGGACAGTACCTCTTTTATCCTGAGAGGATTAGACGCAGGGACGGAGTACACCATCAGTCTAGTGGCAGAGAAGGGCAGACACAAAAGCAAACCCACAACCATCAAGGGTTCGACTG
Seq A exon
TAGAGGAACCTCTCCTTAGCAAACTCACTGTATCAAATGCTACCTCAGACTCCATGTTGCTCATGTGGGAAGCACAGGACAATGCCTTTGACCATTTTATTCTAGAAGTCAGAAACTCTGACTCCCCTTTGGACTCCCTGGTGCAGATAGTGCCAGGGGCCTCCCGGCACTATGTAGTCACCAACCTCAAAGCTGCCACTAATTACACTGTCCAGCTCCATGGTGTAGTTGATGGGCAAGGTGGTCAGACCTTGACAGCACTGGCAACCACAG
Seq C2 exon
AGGCAGAACCCGAGGTGGACAACCTTCTGGTTTCAGATGCTACCCCTGACGGCTTCCGTCTGTCCTGGACTGCAGATGATGGGGTTTTCGACAGTTTTGTTCTAAAAATCAGGGATACCAAAAGGAAATCTGATCCACTGGAACTCATAGTACCAGGCCATGAGCGCACCCATGATATAACAGGGCTGAAAGAGGGCACTGAGTATGAAATTGAGCTCTATGGAGTTAGCAGTGGACGGCGCTCCCAACCCATAAATTCAGTAGCAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113_MULTIEX1-5/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.272
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=88.0)
C2:
PF0004116=fn3=WD(100=88.0)
Main Inclusion Isoform:
ENSGALT00000011523fB13060
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGATCCCTGTGGACAG
R:
CGCTCATGGCCTGGTACTATG
Band lengths:
297-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]