GgaEX1059503 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2653984-2674301:-
Coord C1 exon
chr17:2674038-2674301
Coord A exon
chr17:2661811-2661953
Coord C2 exon
chr17:2653984-2654256
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTCTAACTCTTCCTTGCAGGTT
3' ss Score
10.96
5' ss Seq
AAAGTCAGT
5' ss Score
1.98
Exon sequences
Seq C1 exon
ATCTTGATAACCCCAAGGACTTGGAAGTCAGTGACCCCACTGAAACCACCCTGTCCCTTCGCTGGAGAAGACCAGTGGCCAAATTTGATCGTTACCGCCTCACTTACGTTAGCCCCTCTGGAAAGAAGAACGAAGTGGAGATCCCTGTGGACAGTACCTCTTTTATCCTGAGAGGATTAGACGCAGGGACGGAGTACACCATCAGTCTAGTGGCAGAGAAGGGCAGACACAAAAGCAAACCCACAACCATCAAGGGTTCGACTG
Seq A exon
GTTGTGCCCATTTCCCTGCCCTCAGATACCCCATCAGTCTGCCCACTGCCAAATTCTCTACCTCACTGTTTGACACCTTCTAAAGAAGACCTGCTGCAGACATTTTGAGCTGTGAATGTTAAGCCACCGTCCCATCCAGCAAA
Seq C2 exon
AGGCAGAACCCGAGGTGGACAACCTTCTGGTTTCAGATGCTACCCCTGACGGCTTCCGTCTGTCCTGGACTGCAGATGATGGGGTTTTCGACAGTTTTGTTCTAAAAATCAGGGATACCAAAAGGAAATCTGATCCACTGGAACTCATAGTACCAGGCCATGAGCGCACCCATGATATAACAGGGCTGAAAGAGGGCACTGAGTATGAAATTGAGCTCTATGGAGTTAGCAGTGGACGGCGCTCCCAACCCATAAATTCAGTAGCAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113_MULTIEX1-4/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.272
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
PF0004116=fn3=WD(100=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGAAGGGCAGACACAAA
R:
TGCCCTCTTTCAGCCCTGTTA
Band lengths:
250-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]