HsaEX1041426 @ hg38
Exon Skipping
Gene
ENSG00000041982 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr9:115052740-115057425:-
Coord C1 exon
chr9:115057153-115057425
Coord A exon
chr9:115055476-115055748
Coord C2 exon
chr9:115052740-115053015
Length
273 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTCTTGCTTTAGTAG
3' ss Score
7.11
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CCAAAGAACCTGAAATTGGAAACTTAAATGTTTCTGACATAACTCCCGAGAGCTTCAATCTCTCCTGGATGGCTACCGATGGGATCTTCGAGACCTTTACCATTGAAATTATTGATTCCAATAGGTTGCTGGAGACTGTGGAATATAATATCTCTGGTGCTGAACGAACTGCCCATATCTCAGGGCTACCCCCTAGTACTGATTTTATTGTCTACCTCTCTGGACTTGCTCCCAGCATCCGGACCAAAACCATCAGTGCCACAGCCACGACAG
Seq A exon
TAGCCAAACCTCTTCTTAGCCACCTCACTGTCTCAAACATGACCTGGGGCAGTGTGTCCATCTCGTGGGAAGCTCAGGAGTCTGCCTTTGATAGCTTTCTTATAGAAGTTAGTAATTCCGATCACCCCCATGAGACCATGGTGCTGTCTGTGCCTGGGGTGTCTCGCAGCTCTGTCATCACCAACCTCAAAGCTTCTTCTAATTACACTGCCCACCTTCATGGGCTGATTGGCGGGCAGCGTGCTCAGACCCTGATGGTCCAAGCAACCACAG
Seq C2 exon
AACCAAAGCCACAGTTGGGCACGCTAATCTTTAGCAATATTACTCCAAAAAGCTTCAACATGTCATGGACCACTCAAGCTGGGCTTTTTGCAAAGATTGTTATCAATGTGAGTGACGCTCACTCACTGCATGAGTCCCAGCAATTCACAGTCTCAGGAGATGCAAAGCAAGCTCACATCACAGGCTTGGTGGAGAACACTGGCTATGACGTCAGTGTGGCAGGAACCACCTTGGCTGGGGATCCCACCAGACCCCTCACTGCCTTTGTCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041982-'26-38,'26-37,27-38
Average complexity
C3
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.109 C2=0.065
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=79.3)
A:
PF0004116=fn3=WD(100=85.9)
C2:
PF0004116=fn3=WD(100=87.1)
Main Inclusion Isoform:
ENST00000535648fB28464
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCCCATATCTCAGGGCT
R:
CCAAGCCTGTGATGTGAGCTT
Band lengths:
296-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains