DreEX0080092 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27975305-27987453:-
Coord C1 exon
chr5:27987190-27987453
Coord A exon
chr5:27983190-27983465
Coord C2 exon
chr5:27975305-27975427
Length
276 bp
Sequences
Splice sites
3' ss Seq
CTGATCTGTTTGTCATCCAGATG
3' ss Score
9.01
5' ss Seq
CAGGTATCA
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATCTTGATCCTCCCAAAGACCTTCAAGTAAGTGAGACCACAGAGACCACCCTGGCACTGGTTTGGAGAAGGCCGGTTGCTAAAATCGACACCTATAGTCTAGTGTTTATACCTGCGGATGGAGATAAAACGGAACTGAAGATACCTGGTGCTGCAAATACCTACATCCTGACTGGCCTGAACCCTGGCATGCTGCACACCATTACCCTGACCGCTGAGAGAGGAAGAAAGATGAGTGCGCCAGCCACTCTATCAGCATCCACAG
Seq A exon
ATGAGGAGAAGCCTCAGGTGGGCAACATCACCATCTCTGATGTGTCTTGGGACAGCTTCAGTATGTCCTGGGATCTGGACAGAGGAGAGGTTGAGGGATTTCTGATTGAAGTGTCTGACCCAGATGGCTTATCTGATGGCCAGAACCACACACTGTCTGGCCAGGAGTTCAGCCTGGCTGTCACTGACCTCTCTCCTAGTACTTTCTACAGGGTCACACTGTACGGGCTGTACAAGGGAGAGCTCTTAGACCCTGTCTTTGCCGAAGCCATCACAG
Seq C2 exon
GGCTTGGAACACCGAAGGGAATACGCTTTTCTGATGTGACCGATACATCAGCTACTGTTCACTGGACTATGCCACATACCCGTGTAGACAACTACAGGGTCATCTATGTGCCCATTCAGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.151 C2=0.024
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=86.0)
C2:
PF0004116=fn3=PU(48.1=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACTGGTTTGGAGAAGG
R:
ACGGGTATGTGGCATAGTCCA
Band lengths:
297-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]