BtaEX0037361 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27106925-27110100:-
Coord C1 exon
chr23:27109795-27110100
Coord A exon
chr23:27108471-27108770
Coord C2 exon
chr23:27106925-27107212
Length
300 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCCCTGGATCCTAGCTC
3' ss Score
5.8
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCACAAGCAGAAGAGACTCCTCCAGCCACCGAGCCCCCCAAGGAACCACGCCTCGGGGAACTGACAGTAACAGATGTGACCCCCAACTCCGTGGGCCTCGAGTGGACAGTCTCTGAGGGCCAGTTTGACTCTTTCATGGTCCAGTACAAGGACAGGGACGGGCAGTCCCACGTGGTCCCTGTGGCCGCAGACCAGCGAGAGGCCACTGTCTCCGGGCTGGAGCCTGAGCGCAAATACAGGATGAACGTGTATGGGCTACATGGTGGGCAGCGCGTGGGCCCCCTCTCCGTGGTGGCCCTGACCG
Seq A exon
CTCCCGTCCCCCCAGACCCCGTCACAGAGCCCCCCGTGGAGCCACGCCTGGGGGAGCTGACGGTGATGGATGTGACCCCGGACTCCGTGGGCCTCTCCTGGACCGTCGCCGAGGGCGAATTTGACTCCTTCTTGGTCCAGTACAAGGACAGGGACGGGCAGCCCCAGGTGGTGCCTGTGGCCACTGACCAGCGCGAGGTCACCATACCCGGCCTGGAGCCCAGTAGGAAATACAAGTTCCTGCTCTTTGGGATCCAAGATGGGAAACGCCGCAGCACAGTCTCTGTGGAGGCAAAGACAG
Seq C2 exon
TTGGCCGAGGTGACGCCAGCCCAGGAGCCCCACCCCGCCTTGGGGAGCTGTGGGTGACAGACGCCACCCCAGACTCACTGCGCCTCTCCTGGACGGTCCCTGAAGGCCACTTCGACTCCTTTGTGGTCCAGTTCAAGGACAGGGATGGGCCCCGCGTGGTGTCCGTGGAGGGCCATGAGCGCTCGGTCACCATTAGCCCTCTGGACTCCGGCCGCAAGTACAGATTCCTAGTCTACGGCCTCCTGGGCAAGAGGCGCCATGGCCCCCTCACCACCGAGGGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444-'14-21,'14-17,15-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.446 C2=0.412
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=78.6)
A:
PF0004116=fn3=WD(100=77.2)
C2:
PF0004116=fn3=WD(100=82.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTCTGAGGGCCAGTTT
R:
CCATCCCTGTCCTTGAACTGG
Band lengths:
347-647
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development