HsaEX0066424 @ hg19
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:11976]
Coordinates
chr6:32037904-32041729:-
Coord C1 exon
chr6:32041424-32041729
Coord A exon
chr6:32039767-32040075
Coord C2 exon
chr6:32037904-32038191
Length
309 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTCCCAAATCCCAGCTC
3' ss Score
5.15
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
CCCCACAACAAGAAGAGACCCCTCCAGCCACTGAGTCCCCGCTGGAGCCACGCCTAGGAGAGCTGACAGTGACAGATGTGACCCCCAACTCTGTGGGCCTCTCCTGGACAGTCCCCGAGGGCCAGTTTGACTCCTTCATAGTCCAGTACAAGGACAAGGACGGGCAGCCCCAGGTGGTGCCGGTGGCGGCAGACCAGCGAGAGGTCACAGTCTACAACCTGGAGCCTGAGAGAAAATATAAGATGAACATGTATGGACTACATGATGGGCAACGCATGGGCCCCCTGTCTGTGGTCATCGTGACGG
Seq A exon
CTCCCCTCCCACCAGCCCCAGCCACAGAGGCCTCCAAGCCTCCCCTGGAGCCACGCCTAGGGGAGCTGACAGTGACGGATATAACCCCTGACTCTGTGGGCCTCTCATGGACAGTCCCTGAGGGTGAATTCGACTCCTTTGTGGTTCAGTACAAGGACAGGGACGGGCAGCCCCAGGTGGTGCCCGTGGCTGCAGATCAGCGGGAGGTCACTATCCCTGACCTGGAACCCTCCCGCAAGTACAAGTTCCTGCTCTTTGGGATCCAGGATGGGAAACGACGCAGCCCAGTCTCTGTGGAGGCAAAGACGG
Seq C2 exon
TTGCCCGAGGTGACGCCAGCCCAGGGGCCCCACCCCGCCTTGGGGAGCTGTGGGTGACAGACCCCACCCCAGACTCACTGCGCCTCTCCTGGACGGTTCCTGAGGGCCAGTTCGACTCTTTTGTGGTCCAGTTCAAGGACAAAGACGGGCCCCAGGTGGTGCCCGTGGAGGGCCATGAGCGCTCTGTCACTGTCACCCCTCTGGATGCCGGCCGCAAGTACAGATTCCTCCTCTATGGCCTCCTGGGCAAGAAGCGCCATGGCCCTCTCACTGCCGACGGCACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-'15-20,'15-18,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.490 C2=0.485
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=78.6)
A:
PF0004116=fn3=WD(100=76.0)
C2:
PF0004116=fn3=WD(100=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCGAGAGGTCACAGTCTA
R:
GAGGAATCTGTACTTGCGGCC
Band lengths:
343-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)