MmuEX0048447 @ mm10
Exon Skipping
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34689324-34698933:+
Coord C1 exon
chr17:34689324-34689544
Coord A exon
chr17:34692274-34692588
Coord C2 exon
chr17:34698878-34698933
Length
315 bp
Sequences
Splice sites
3' ss Seq
GATCTCTCTTCTCATCCTAGACT
3' ss Score
7.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGCAGAGGAAGAACCCCCCAGCCCCACAGAGCCCAGCACAGAGGCGCCAGAACCCACTGAGGAGCCGCTCCTGGGAGAGCTGACAGTGACAGGATCGTCCCCAGACTCCCTGAGCCTCTCCTGGACCGTCCCCCAGGGAGACTTTGACTCCTTCACTGTCCAGTACAAGAGCAGTGATGGGCGGCCCCAGGTGATGCGTGTCGGGGGCCAGGAGAGGGAG
Seq A exon
ACTCTCTCTCACCAGCACCAGCTCCAGCCACCGAGGCCTCCAAGCTGCTCCCAGAACCACGACTGGGGGAACTAACAGTGACAGATGTGACCCCGGACTCAGTGGGCCTCCTGTGGACTGTCCCTGAGGGTGAATTCGACTCCTTCACGGTCCAGTACAAGGACAGGGATGGCCAGCCCCACGTGGTGTCTGTGGCAGCAGACCTACGGGAGGTCACCATCCCAGGCCTGGAGCCCTCTCGCAAGTACAAGTTCCTGCTCTTTGGGGTCCAAGATGGGAAAAGACGCAGCCAGGTCTCTGTAGAGGCGAAGACAG
Seq C2 exon
AGGAAGAGCCTCCTAGCCCCACAGAGCCCAGGACAGAGGCCCCAGAGCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327_MULTIEX2-2/16=C1-10
Average complexity
C3*
Mappability confidence:
79%=100=81%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.798 A=0.327 C2=NA
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=74.3)
A:
PF0004116=fn3=WD(100=78.2)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGAGGAAGAACCCCC
R:
CTCTGTGGGCTCTGGGGC
Band lengths:
277-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types