BtaEX0037365 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27116671-27119909:-
Coord C1 exon
chr23:27119616-27119909
Coord A exon
chr23:27117342-27117632
Coord C2 exon
chr23:27116671-27116976
Length
291 bp
Sequences
Splice sites
3' ss Seq
CTCCCACCTCCTCTTCCTAGTGT
3' ss Score
8.81
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACAAGGATGGGGAGAAACCTGGGAAACCCTTGGCCCCACCTCGCCTGGGCAAGCTGACAGTGACAGACGTGACCTCGGACTCCCTGCTTCTGCACTGGACAGTCCCTGAGGGCGAGTTCGATTCCTTTGTGATCCAGTACAAAGACAGGGACAGGCCCCAGGTGGTGCCTGTAGAAGGGCCCCAGCGCTCAGCCCTCATCTCCAACCTGGACGTCGGCCGCAAGTACAAATTTGTCCTATACGGGCTCGTGGGCAAGAAGAGGCACGGCCCCCTGGTGGCTGAAGCCAAAATCT
Seq A exon
TGTCTCAGACTGATCCCAGCCCAGTGACTCCACCCCGCCTGGGGAAGCTGTGGGTGACTGATCCCACCCCAGACTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACTCCTTCATGGTCCAGTACAGGGACAGGGCCGGCCGGCCACAGGTGGTGCCCGTGGAAGGGCCCGAGCGCTCGGTCATTATCTCCCCGCTAGACCCTGACCACAAGTACAGATTCACTCTGTTTGGGATTGCCAACAAGAAGCGGCATGGCCCCCTCACGGCTGATGGCACCACCG
Seq C2 exon
CCCCAGAGAAGAAAGAGGAGCCCCGCCACCCAGAGCCCCCAGAGCGGCCCCTGCTGGGGGAGCTGACAGTGGCTGGCGCCACTGCAGACTCTCTGCGCCTCTCCTGGACGGTGGCCCAGGGCTCTTTCGACTCCTTTGTGGTCCAGTACAAGGATGCCCAGGGGCGGCCCCAAGCAGTGCCCGTCACGGGTGATGAGAATGAGGTCGCCATCCCCGGCCTGGAGCCCGACCGGAAGTATAAGATGAACCTCTACGGGCTTCATGGCAGGCAGCGCGTGGGGCCCGTGTCCGTGGTGGCCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.418 C2=0.709
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=79.8)
A:
PF0004116=fn3=WD(100=82.7)
C2:
PF0004116=fn3=WD(100=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAAGACAGGGACAGGCC
R:
ACTGGACCACAAAGGAGTCGA
Band lengths:
305-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development